Gene detail information of Glyur000023s00004884.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G11090.1 | 5.00E-48 | LOB domain-containing protein 21 |
| NR | XP_003544066.1 | 1.78E-97 | PREDICTED: LOB domain-containing protein 21-like [Glycine max] |
| Swissprot | tr|Q9SRL8|LBD21_ARATH | 2.00E-60 | LOB domain-containing protein 21 |
| trEMBL | tr|I1M7R7|I1M7R7_SOYBN | 7.00E-98 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA14G06270.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00023 | 87584 | 88129 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | LOB |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000023s00004884.1 | PF03195.9 | DUF260 | 11 | 110 | 2.90E-35 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.669 |
| SRR1783600 | control | 0.594 |
| SRR1783602 | moderate drought stress | 1.656 |
| SRR1811619 | moderate drought stress | 1.548 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.700 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.503 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 25.726 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 25.491 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.987 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.909 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 131.245 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 132.140 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 9.352 |
| SRR2868004 | Drought Stress(Tissue:root) | 10.976 |
| SRR2967015 | Control (Tissue:root) | 9.878 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 46.833 |
| SRR9715740 | Leave | 88.689 |
| SRR9715741 | Leave | 72.298 |
| SRR9715739 | Root | 3.289 |
| SRR9715742 | Root | 3.652 |
| SRR9715743 | Root | 4.924 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.104 |
| SRR8749028 | MeJA induced 9h | 1.825 |
| SRR8749029 | MeJA induced 9h | 5.160 |
| SRR8749030 | Uninduced | 1.886 |
| SRR8749031 | Uninduced | 7.344 |
| SRR8749032 | Uninduced | 2.447 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 17.845 |
| SRR8400027 | Control-Root | 11.755 |