Gene detail information of Glyur000023s00004891.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G40200.1 | 5.00E-37 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein |
| NR | AFK48809.1 | 2.34E-133 | unknown [Lotus japonicus] |
| Swissprot | tr|Q9XEF0|BH051_ARATH | 5.00E-46 | Transcription factor bHLH51 |
| trEMBL | tr|I3T8G7|I3T8G7_LOTJA | 9.00E-134 | Uncharacterized protein {ECO:0000313|EMBL:AFK48809.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00023 | 142804 | 144454 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | bHLH |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000023s00004891.1 | PF00010.21 | HLH | 72 | 118 | 1.50E-11 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 9.227 |
| SRR1783600 | control | 9.307 |
| SRR1783602 | moderate drought stress | 17.429 |
| SRR1811619 | moderate drought stress | 17.444 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 10.069 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 10.139 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 10.031 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 9.719 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 21.391 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 21.417 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 10.650 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 10.714 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 1.963 |
| SRR2868004 | Drought Stress(Tissue:root) | 3.255 |
| SRR2967015 | Control (Tissue:root) | 3.296 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 3.587 |
| SRR9715740 | Leave | 7.307 |
| SRR9715741 | Leave | 4.817 |
| SRR9715739 | Root | 2.350 |
| SRR9715742 | Root | 4.058 |
| SRR9715743 | Root | 4.105 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.068 |
| SRR8749028 | MeJA induced 9h | 0.222 |
| SRR8749029 | MeJA induced 9h | 0.252 |
| SRR8749030 | Uninduced | 0.248 |
| SRR8749031 | Uninduced | 0.542 |
| SRR8749032 | Uninduced | 2.082 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 4.490 |
| SRR8400027 | Control-Root | 4.246 |