Gene detail

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Gene detail information of Glyur000023s00004897.1

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT5G05570.2	transducin family protein / WD-40 repeat family protein
NR	XP_004491029.1	PREDICTED: lethal(2) giant larvae protein homolog SRO77-like isoform X1 [Cicer arietinum]
trEMBL	tr\|G7K253\|G7K253_MEDTR	Nucleotide-binding protein, putative {ECO:0000313\|EMBL:AES99613.2}

Sequence

Transcript Sequence

>Glyur000023s00004897.1
ATGTTTTCTAGATTCTTTCAGAAATCATCACCGCAACAACAACACACACAGCAGCAGAACGCTGCGCAAGGTAGCTTTTCGTCGCCGAATTTCAATCCGCGAGTTGATCTTCACTATGGAGTTCCATCGACTGCGTCTATCCTTGCCTTTGATCGCGTCCAACGTCTATTGGCAGTGGGAACAACTGATGGCAGGATAAAGGTATTTGGTGGTGACAATATTGAAGGGATTCTGATCTCTCCTAAGCAAACGTCCTTCAAGAATTTAGAGTTCTTGGAAAATCAAGGTTTTCTTGCTAGCGTCTCAAGTGATAATGAAATACAGGTTTGGGATTTGAAAAGCAGGCAAATTGCTTCTGCTTTGCAATGGGAATCCATCATAACTGCTTTCTCTGTTATTTATGGCACCAGTTACATGTTNATTGGATGTGATTATGGGATGGTATATGTGTTAAAGTTTGATTNTGAAGACAGAAGAATTAATATATTACCTTATTACGTTCCCACAAATGTTATATCAGGGGTGACTTGTGAAGTGTGTTTAACAATAATGCTTGTATTATATGGTGCATTCTATCTGAGAAGAAATATTTGGAAGCAGTTGGAATGTCACTTGATCATGTTTCAGTTGTCAGAGTTCTCCACCAACCTTGTTCTGATGGAAAAAGGCAAGACAAGATCTTACTTTAAAGTTTCTCTTATTGATTTCCTTGTGATATATGACGAAATTGTGGGCATGGATTCTAGAATGTTGATCGCATATGCGAATGGTGTAATGGTGCTCTGGGATGCTTCTGAAGATCGAATTATTCTCATCAGAGGCCACAAGGACATGGAATTAAAGAGGAAAGAAGTGGCTAGCTATCCAAATGCCCCTAAGGATGAACATGTTGATCATAGATTAGACAATGAACAAGAGGATAAGGAGATAAGCTCTGTTTCTTGGGCATCTAGTGATGGATCAGTTGTTGTTGTTGGTTATGTAGATGGCGATATAATGTTTTGGGATTTGCCAGCTTCTGACTCTCTAAAAGATCAAAAAGCTAAAAAAGTGTCAAATAATGTTGTCAAGCTTCNATTATCATCGGCAGATAGAAGATTCCCGATTATTGTTCTACACTGGTGTGCCAATAAATCTTTGAAAAATAGTGGGGGCAACCTTTTTGTCTATGGTGGTGACGAAATTGGGTCTGAAGAAGTTCTGACAGTTTTGAGGATTGATTGGTCTTGTGGGATAGAAAGTNTCGAGTGCACTGGCCGCATTGATGTTTCACTTCATGGTTCTTTTGCTGATATGGTTTTGTTGTCTAGTGATGGCCATGCAGAGGGAGATTGTAATTTGCTATTTGTATTGACAACTCCTGGACAACTGGATCTTTATGACAATAATTGTTTGTCTTCTTTGATGTCTCAGCAACAAAAGAAGATTTCTGCTCCCACAATACAATATCCCATCGTCATTCCAGCACTTGAACCGTACATGACAATAGCAAGGTTTGATGTTGTATACCAAGATGTGAAGTCATTTAGGGCCCTATCTGAGATTCTTGTAGCTATAAAGCAGCAATCAGTACAAAATCAGACAAGCACGGGTATANAGTGGCCTTTGACTGGAGGTGTTCCAGGTCAGCTTTTCGAAGAAGTCCATCCTATCATTCAAATATACATAGCAGGTTACCAAGATGGATCTGTTCGGATATGGGATGCTACATATCCTGCTTTGTCACTTATTTACAACATAAAATATGAGGTGAATGATGCTAAAATTGGCAGTGCAAGTGCGCCAGTGTCAGCATTGGATTTTTGCTCTGATACTCTTCATATGGCTGTTGGTGATGAAAGTGGCGTTGTTCGTCTATATGGGCTAATAAGGAGTTCAGATGACACAACTTTGTACTTCGTGACAGAAAATGGAACTGAAGTTCATAATATGAATCAAGGGGATGGACCTCATTGTAAAGCAGTGTTTTCCTTTCAAAATTCTGCTGTATGCGGCCTACAGTTTGCAAACCTTGGAGGGAAGCTTGCTGTTGGATATGAACATGGACAGGTGGCTATGCTTGATATCAGTACATCATCAGTTTTGTTTGTTACAAATACTGAATCCAACACATCTTCAGCAGTCATTTCTCTGAATGCAAAATTTTCAGACGCTTGTAGCTTGAACATTCCACAGGAATCTGTATCTGATATTTCTGACAATTCTGGAAAGGGGCTAGTCTTCATTATGACAAGGAATGCACACTTTGTTGCAATAGAAACTGCGACAGGGAATATGGTTTGTAGTAGGACAATGAACCCAAGAGTAAAGTNGAATGCAATTTCAATGCACATTATAGGCAAGTATTTTGATGGTACATCTGAACTATCCGCTGAAAAGCTGCCATCCAACTCGCCTCAGAAGAGCGATTCTGGAACGCAAGCTGACGTTCAATCCGAAAATGCACAAGTTGAAGTTGAAACTGCTACTACCATAGAAGATTCATATTTTGGGCAGATATTATTGAACTCACTCATTTTACTTTGTTATGAGAGTGAATTGAGCTTACACTCCTTGAATTTTGTGATTGAGGGTAGCGATAAGTACATACGAAAGGTGAACCTTGTACAAAAATGCTGCTGGACTACAACCTTTAAGAAAGATGACAAAGAATGCATTCTGGTTGTTCTTTATCAAACTGGAGACATTGAATTAAGGTCCTTGCCAACTCTGGAAGTATTGGGAGAAAGCTCTTTAATGTCAATCTTAAGATGGAACTTGAAGACCAACATGGAGAAGACAATATGTTCTTCATCAAATGGACAAATAATTCTGGTCAATGGGAATGAAGCTGCTTTCTTATCACTATCAACCTGTGAAAATGAGCTCTGGATTACTGGGTCTTTTCCTTGTCTTCATGATGAAGTTCTTGCAGCTGCAGTAGATGTTACTGCAAGCCTATCTCCAAAGCGAAATGAAAAACAGGGAGCACCTGCTATCTTCATTAATATAGCTAAGAACTTTAGAGCGGGGAAAGCGGATCACAATACAAANCAAGCAATTCAACATAATTATTTGGAAAATTTAGAACGATTATTCTCCAGTCCTCCTTTCTTAAAGCCTTCCTCAGGCGCAGTAGATAAGCAAGATGCTTTTGAGATTGACATAGATGAAATTCATATTGATGAACATGTGGCNTTTCCATCCCCTCAGACAAAAGTTATTGTCAAGAGAGAAAAAGGAAAAGGAACAGACAGAGAGAAGTTACTTGAGGATGCAACAACCGACTCAAAACCAAGAACTAGAACAACTGAAGAAATTAAGGCTAAATACAGAAAAACGGGGGATGCATCGGCAGCAGCTGCACTTGCAAAGGATAAGCTTATAGAGCGGCAAGAAAAACTCCAGTTGCTCAACGACCGTAGTGAAGAGTTGCAGAGTGGGGCACAAGACTTTGCATCCATGGCAAGTGAACTCGCTAAAAGAATGGAAAATCGTAAATGGTGGCAGTTATGAGGTTGCATGATTTCTTTTTTTTCATCAACACGTTGCGCTGCGCTCCTTTAGAAGTTGAAATTCTGTCTGAACTTTNGTTGTTTCGAAAGGTAGCTCTGATTATTCCGTTGCTTATTTACAGTTTGTAAACATATTTGTTCCCTCGGGTCCATGTTAGTGTAATTTTTTTATCATGTTAGTGTA

Protein Sequence

>Glyur000023s00004897.1
MFSRFFQKSSPQQQHTQQQNAAQGSFSSPNFNPRVDLHYGVPSTASILAFDRVQRLLAVGTTDGRIKVFGGDNIEGILISPKQTSFKNLEFLENQGFLASVSSDNEIQVWDLKSRQIASALQWESIITAFSVIYGTSYMXIGCDYGMVYVLKFDXEDRRINILPYYVPTNVISGVTCEVCLTIMLVLYGAFYLRRNIWKQLECHLIMFQLSEFSTNLVLMEKGKTRSYFKVSLIDFLVIYDEIVGMDSRMLIAYANGVMVLWDASEDRIILIRGHKDMELKRKEVASYPNAPKDEHVDHRLDNEQEDKEISSVSWASSDGSVVVVGYVDGDIMFWDLPASDSLKDQKAKKVSNNVVKLXLSSADRRFPIIVLHWCANKSLKNSGGNLFVYGGDEIGSEEVLTVLRIDWSCGIESXECTGRIDVSLHGSFADMVLLSSDGHAEGDCNLLFVLTTPGQLDLYDNNCLSSLMSQQQKKISAPTIQYPIVIPALEPYMTIARFDVVYQDVKSFRALSEILVAIKQQSVQNQTSTGIXWPLTGGVPGQLFEEVHPIIQIYIAGYQDGSVRIWDATYPALSLIYNIKYEVNDAKIGSASAPVSALDFCSDTLHMAVGDESGVVRLYGLIRSSDDTTLYFVTENGTEVHNMNQGDGPHCKAVFSFQNSAVCGLQFANLGGKLAVGYEHGQVAMLDISTSSVLFVTNTESNTSSAVISLNAKFSDACSLNIPQESVSDISDNSGKGLVFIMTRNAHFVAIETATGNMVCSRTMNPRVKXNAISMHIIGKYFDGTSELSAEKLPSNSPQKSDSGTQADVQSENAQVEVETATTIEDSYFGQILLNSLILLCYESELSLHSLNFVIEGSDKYIRKVNLVQKCCWTTTFKKDDKECILVVLYQTGDIELRSLPTLEVLGESSLMSILRWNLKTNMEKTICSSSNGQIILVNGNEAAFLSLSTCENELWITGSFPCLHDEVLAAAVDVTASLSPKRNEKQGAPAIFINIAKNFRAGKADHNTXQAIQHNYLENLERLFSSPPFLKPSSGAVDKQDAFEIDIDEIHIDEHVAFPSPQTKVIVKREKGKGTDREKLLEDATTDSKPRTRTTEEIKAKYRKTGDASAAAALAKDKLIERQEKLQLLNDRSEELQSGAQDFASMASELAKRMENRKWWQL

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00023	205220	218122	+

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0016192 vesicle-mediated transport

cellular_component GO:0016021 integral component of membrane molecular_function GO:0005515 protein binding "

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000023s00004897.1	PF00400.27	WD40	309	336	0.12
Glyur000023s00004897.1	PF00957.16	Synaptobrevin	1119	1160	1.30E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.033
SRR1783600	control	6.082
SRR1783602	moderate drought stress	7.529
SRR1811619	moderate drought stress	7.690

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	11.660
DRR006520	Root Summer glycyrrhizin high producing strain	11.727
DRR006521	Root Winter glycyrrhizin high producing strain	10.501
DRR006522	Root Winter glycyrrhizin high producing strain	10.331
DRR006523	Root Summer glycyrrhizin low producing strain	12.648
DRR006524	Root Summer glycyrrhizin low producing strain	12.510
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.968
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.069

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	15.301
SRR2868004	Drought Stress(Tissue:root)	12.332
SRR2967015	Control (Tissue:root)	11.739

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	2.875
SRR9715740	Leave	3.257
SRR9715741	Leave	1.988
SRR9715739	Root	0.563
SRR9715742	Root	3.377
SRR9715743	Root	3.138

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	9.797
SRR8749028	MeJA induced 9h	9.532
SRR8749029	MeJA induced 9h	7.075
SRR8749030	Uninduced	8.708
SRR8749031	Uninduced	8.171
SRR8749032	Uninduced	5.937

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	11.753
SRR8400027	Control-Root	12.271