Gene detail information of Glyur000023s00004900.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G40140.21.00E-151zinc finger (CCCH-type) family protein
NRXP_003544707.10PREDICTED: zinc finger CCCH domain-containing protein 29-like isoform 1 [Glycine max]
Swissprottr|Q9XEE6|C3H29_ARATH0Zinc finger CCCH domain-containing protein 29
trEMBLtr|I1M6J5|I1M6J5_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA14G01990.2}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00023221422224148-


Gene family

Gene familysubfamily
Transcription Factors FamilyC3H


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0005515  protein binding

GO:0046872  metal ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000023s00004900.1PF12796.2Ank_2881921.10E-10
Glyur000023s00004900.1PF00642.19zf-CCCH3173374.20E-05


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control33.696
SRR1783600control34.062
SRR1783602moderate drought stress35.520
SRR1811619moderate drought stress35.847

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain521.295
DRR006520Root Summer glycyrrhizin high producing strain512.388
DRR006521Root Winter glycyrrhizin high producing strain16.479
DRR006522Root Winter glycyrrhizin high producing strain16.000
DRR006523Root Summer glycyrrhizin low producing strain902.277
DRR006524Root Summer glycyrrhizin low producing strain894.158
DRR006525Leaf Summer glycyrrhizin high producing strain252.262
DRR006526Leaf Summer glycyrrhizin high producing strain250.680

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)84.116
SRR2868004Drought Stress(Tissue:root)274.106
SRR2967015Control (Tissue:root)649.681

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave638.691
SRR9715740Leave954.893
SRR9715741Leave737.832
SRR9715739Root1404.336
SRR9715742Root1944.088
SRR9715743Root1779.959

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h478.602
SRR8749028MeJA induced 9h400.987
SRR8749029MeJA induced 9h297.892
SRR8749030Uninduced662.914
SRR8749031Uninduced284.826
SRR8749032Uninduced286.828

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root147.783
SRR8400027Control-Root403.777

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved