Gene detail

Home
Network
Tools
- Search
- Blast
- Motif
- GSEA
- Heatmap Analysis
- JBrowse
Gene family
KEGG
Download
Help

Gene detail information of Glyur000023s00004907.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G55950.1	0	CRINKLY4 related 3
NR	XP_004490995.1	0	PREDICTED: putative serine/threonine-protein kinase-like protein CCR3-like [Cicer arietinum]
COG	YP_006915967.1	9.00E-22	PASTA sensor-containing serine/threonine protein kinase [Simiduia agarivorans SA1 = DSM 21679]
Swissprot	tr\|Q9LY50\|ACCR3_ARATH	0	Putative serine/threonine-protein kinase-like protein CCR3 (Precursor)
trEMBL	tr\|G7KH13\|G7KH13_MEDTR	0	Serine/Threonine-kinase CCR3-like protein, putative {ECO:0000313\|EMBL:AES99595.2}

Sequence

Transcript Sequence

>Glyur000023s00004907.1
ATGAAGAAGAAACCACTTTCTTCCACCGTCACTTTTTCCTTCGCCGTCGTTTTTATCCTCTCTTCAATAACACCCTTCTTCTGCAATGCTCTCGGTTCCGGCACCACCCTCGCCGTCACCGACGCCACCGCCACCATCTGCGGCGTCGTGGCGGAGCAATCGACGAGGCACATTGAGTGCTACCGTAACGGCCACGTCATCGCTGCCGCGCCGGAAGTCTCGTTCTCCTCGATCTCCGGCGGGAGTAGCTACTTCTGCGGCCTCAGGTCCGGCAACTACAGCCTTCTATGCTGGAACACCGTTTCCTCGAACCCCACCTTCGAAAGGAAGAGACTTTACAACAATGGCACTGTTCTATACGAGAATCTCTCTGTGGGTGACACCCAAGTCTGCGCCACCGTGGTTGGCACCGGAACGGTGTCGTGTTGGAGAACCAATAAAGCTTTTAAATTTCCTTCTGGGTATGATCAATTTTCGTCTATAACTTCTGGGAAAGGCTTCTCCTGTGGGATTTTGAGGAACAAAACTTCTGGGGTGGTTCGTTGTTGGGGGAATGAGTCTATTGCTAGAAGATTAGAGGGTGCGTTTGGGAACATGTCTATGGTGAGTCTTGTGGCTGGTGAGTATCATGTTTGTGGGTTGAATTCAAGTTGGGTTTTGGTTTGTAGAGGAAGTAATAGTTTTGGGCAAATTGATGTTCCTCAAGGCGGGGATTTGGAGTATTCTGGGTTGGCACTTGGAGCTGAACATAGCTGTGCTATTAGGAGATCCAATGGTTCTGTCGTTTGTTGGGGTGGAAGAGGATTGTTCAATGTTAATGTCACAAAAGGGGTTTCCTTTGAGGTCATTGTTTCTGGGTCCAATTTCACTTGTGGATTGACAACTAACAATTTTTCAGTTATTTGTTGGGGCCCTGGTTGGCCTAATAATGGTTCTGGTTCTGGTTCTGGTTCAACAAGGTTTGAGCTTCCTTTGCCTCCTATCCTTCCAGGGCCTTGTGTTCAATCTTCTTGTAGTGAGTGTGGTATATATCCTCAATCTCAATATCTATGCTCTGGTTCTGGTAATATTTGCAAGCCACAGCCTTGTTGGCCTCAAATGCCGGTGCCAGTGCCGGAGCAGCCTCAGATACCGCCACCGCGATCGCAGCCTGCTTCCCGGTCTAAGACATTGACAAAGGGATTATTGGCATTTGCAATTGTTGGATCAGTGGGAACTGTTGCTGGTATTTGCACATTGGTCTATTGCTTGTGGACTGGTGTGTGTTTTGGGAAGAAGAAAATTCACAATTCTGTGCAACCAACAATCACTAGAGGTGGAAGCTACAATGGTGGTGGTGCTATTTTTTCGAATAATAGCCCGCCTTCGAGATCTTCGACCATTAGGCGTAATGGTTCGAGGATTATGAGGCGGCAGAGGAGTGGAACCTCATCAACAAAGCATCCAGAAAGGGCAGAGGAGTTCACACTTGCTGAGCTTGTTGCAGCCACCAACAATTTCTCACTTGAGAACAAGATTGGTGCTGGAAGCTATGGTGTTGTCTACAAAGGGAAACTTGGTGATGGCCGTGAGGTAGCAATCAAAAGGGGTGACACTGGTAGTACTAATAAGATGAAGGTGTTTCAAGAGAAAGAGAGTGCATTTGAGTCAGAATTGGCCTTCTTGTCACGGCTACACCACAAGCACTTGGTTAGGCTTGTTGGTTACTGTGAGGAAAAAGATGAAAGGCTCTTGGTGTATGAGTACATGAAGAATGGGGCATTGTATGATCACCTTCATGACAAGAACAATGTGGACAAGAGTAGTAGTGTCTTGAATTCTTGGAGAATGAGGATCAAAATCGCGCTGGACGCTTCGCGGGGGATCGAGTATCTCCATAATTATGCAGTTCCATCTATAATTCACAGAGATATCAAGTCCTCCAACATCCTCATCGACACGAATTGGACCGCGAGAGTGTCTGATTTTGGATTGTCATTGATGAGTCCGGATAACAACCATGATTACCGGCCAACGAAGGCAGCAGGAACGGTTGGATACATTGATCCTGAATACTATGGTCTAAATGTGTTGACAGCAAAGAGTGATGTCTATGGGCTTGGAGTGGTGTTGCTAGAACTATTAACAGGAAAGAGAGCTATCTTCAAGAATGGTGAAAATGGAGGCACCCCAGTGAGTGTGGTAGACTATGCAGTGCCTACATTTATGGCAGGAGAATTGGAGAAAATTTTGGACCCGAGGGTTGAACCACCAGAGTTGAATGAAACAGAAGCAGTGGAGCTAGTGGCATATACTGCTATGCATTGTGTAAATTTGGAGGGGAAGGATAGACCAACAATATCTGATATTGTGGCCAATTTGGAACGTGCTTTGGCACTTTGTGATAGTAGTCATGGCAGCATTTCAAGTGCTACAATCTCTATTGGATCTGATTAA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00023	273186	275621	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.4.1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function GO:0004672 protein kinase activity GO:0005524 ATP binding GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000023s00004907.1	PF13540.1	RCC1_2	202	230	7.70E-06
Glyur000023s00004907.1	PF00069.20	Pkinase	501	784	1.00E-44

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.105
SRR1783600	control	0.106
SRR1783602	moderate drought stress	0.094
SRR1811619	moderate drought stress	0.104

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.089
DRR006520	Root Summer glycyrrhizin high producing strain	0.088
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.091
DRR006524	Root Summer glycyrrhizin low producing strain	0.045
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.115
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.096

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	3.841
SRR2868004	Drought Stress(Tissue:root)	2.412
SRR2967015	Control (Tissue:root)	2.097

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.439
SRR9715740	Leave	0.026
SRR9715741	Leave	0.108
SRR9715739	Root	0.324
SRR9715742	Root	0.071
SRR9715743	Root	0.296

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.638
SRR8749028	MeJA induced 9h	1.927
SRR8749029	MeJA induced 9h	0.568
SRR8749030	Uninduced	2.498
SRR8749031	Uninduced	0.314
SRR8749032	Uninduced	0.244

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	1.259
SRR8400027	Control-Root	0.724