Gene detail information of Glyur000023s00004910.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G40116.11.00E-160Phosphoinositide-specific phospholipase C family protein
NRKHN34718.10Phosphoinositide phospholipase C 6 [Glycine soja]
COGYP_006363103.19.00E-0750S ribosomal protein L7Ae [Thermogladius cellulolyticus 1633]
Swissprottr|Q8GV43|PLCD6_ARATH0Phosphoinositide phospholipase C 6
trEMBLtr|P93620|P93620_VIGUN0Phosphoinositide phospholipase C {ECO:0000256|RuleBase:RU361133}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00023296029303871-


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K05857PLCD EC:3.1.4.11 Inositol phosphate metabolism map00562
Calcium signaling pathwaymap04020
Phosphatidylinositol signaling systemmap04070
Thyroid hormone signaling pathwaymap04919
AGE-RAGE signaling pathway in diabetic complicationsmap04933


Gene Ontology

biological_process

GO:0006412  translation

GO:0006629  lipid metabolic process

GO:0007165  signal transduction

GO:0035556  intracellular signal transduction


cellular_component

GO:0005622  intracellular

GO:0005840  ribosome


molecular_function

GO:0003735  structural constituent of ribosome

GO:0004435  phosphatidylinositol phospholipase C activity

GO:0005515  protein binding

GO:0008081  phosphoric diester hydrolase activity

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000023s00004910.1PF09279.6EF-hand_like31761.30E-06
Glyur000023s00004910.1PF00388.14PI-PLC-X912211.90E-40
Glyur000023s00004910.1PF00387.14PI-PLC-Y2773601.50E-19
Glyur000023s00004910.1PF00168.25C23784692.90E-15
Glyur000023s00004910.1PF01248.21Ribosomal_L7Ae5476406.00E-24


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control60.726
SRR1783600control60.966
SRR1783602moderate drought stress43.190
SRR1811619moderate drought stress42.703

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain87.879
DRR006520Root Summer glycyrrhizin high producing strain86.613
DRR006521Root Winter glycyrrhizin high producing strain41.689
DRR006522Root Winter glycyrrhizin high producing strain40.789
DRR006523Root Summer glycyrrhizin low producing strain64.182
DRR006524Root Summer glycyrrhizin low producing strain65.591
DRR006525Leaf Summer glycyrrhizin high producing strain62.041
DRR006526Leaf Summer glycyrrhizin high producing strain62.320

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)174.067
SRR2868004Drought Stress(Tissue:root)110.565
SRR2967015Control (Tissue:root)104.959

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave80.620
SRR9715740Leave85.716
SRR9715741Leave82.124
SRR9715739Root66.605
SRR9715742Root70.267
SRR9715743Root69.678

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h155.301
SRR8749028MeJA induced 9h54.725
SRR8749029MeJA induced 9h125.921
SRR8749030Uninduced12.515
SRR8749031Uninduced4.869
SRR8749032Uninduced18.238

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root120.738
SRR8400027Control-Root108.399

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved