Gene detail information of Glyur000023s00004939.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G39990.13.00E-99eukaryotic translation initiation factor 2
NRXP_003616582.10Eukaryotic translation initiation factor 3 subunit F [Medicago truncatula]
Swissprottr|O04202|EIF3F_ARATH1.00E-145Eukaryotic translation initiation factor 3 subunit F {ECO:0000255|HAMAP-Rule:MF_03005}
trEMBLtr|G7KBY4|G7KBY4_MEDTR0Eukaryotic translation initiation factor 3 subunit F {ECO:0000256|HAMAP-Rule:MF_03005}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00023528787532638+


Gene family

Gene familysubfamily
Ubiquitin FamilyJAMM


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

cellular_component

GO:0005737  cytoplasm

GO:0005852  eukaryotic translation initiation factor 3 complex


molecular_function

GO:0003743  translation initiation factor activity

GO:0005515  protein binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000023s00004939.1PF01398.16JAB171191.90E-18
Glyur000023s00004939.1PF13012.1MitMem_reg1712893.20E-15


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control94.452
SRR1783600control94.499
SRR1783602moderate drought stress116.129
SRR1811619moderate drought stress117.074

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain137.185
DRR006520Root Summer glycyrrhizin high producing strain135.679
DRR006521Root Winter glycyrrhizin high producing strain63.895
DRR006522Root Winter glycyrrhizin high producing strain63.502
DRR006523Root Summer glycyrrhizin low producing strain118.537
DRR006524Root Summer glycyrrhizin low producing strain117.579
DRR006525Leaf Summer glycyrrhizin high producing strain27.010
DRR006526Leaf Summer glycyrrhizin high producing strain26.558

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)60.752
SRR2868004Drought Stress(Tissue:root)60.696
SRR2967015Control (Tissue:root)63.123

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave33.820
SRR9715740Leave44.059
SRR9715741Leave41.392
SRR9715739Root153.170
SRR9715742Root97.381
SRR9715743Root104.470

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h146.627
SRR8749028MeJA induced 9h77.930
SRR8749029MeJA induced 9h82.601
SRR8749030Uninduced40.050
SRR8749031Uninduced32.223
SRR8749032Uninduced54.779

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root123.460
SRR8400027Control-Root109.857

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved