Gene detail information of Glyur000023s00004942.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G05780.12.00E-128RP non-ATPase subunit 8A
NRXP_003616580.11.67E-17326S proteasome regulatory particle non-ATPase subunit [Medicago truncatula]
Swissprottr|O24412|PSD7A_ARATH2.00E-16126S proteasome non-ATPase regulatory subunit 7 homolog A
trEMBLtr|B7FLW2|B7FLW2_MEDTR6.00E-174Uncharacterized protein {ECO:0000313|EMBL:AFK34493.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00023542106545343+


Gene family

Gene familysubfamily
Ubiquitin FamilyJAMM


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0005515  protein binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000023s00004942.1PF01398.16JAB13648.40E-08
Glyur000023s00004942.1PF13012.1MitMem_reg1432449.60E-28


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control23.933
SRR1783600control23.948
SRR1783602moderate drought stress25.834
SRR1811619moderate drought stress26.012

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain36.212
DRR006520Root Summer glycyrrhizin high producing strain37.129
DRR006521Root Winter glycyrrhizin high producing strain19.630
DRR006522Root Winter glycyrrhizin high producing strain19.578
DRR006523Root Summer glycyrrhizin low producing strain27.098
DRR006524Root Summer glycyrrhizin low producing strain26.641
DRR006525Leaf Summer glycyrrhizin high producing strain15.450
DRR006526Leaf Summer glycyrrhizin high producing strain14.788

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)53.780
SRR2868004Drought Stress(Tissue:root)48.425
SRR2967015Control (Tissue:root)46.627

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave18.515
SRR9715740Leave22.101
SRR9715741Leave28.485
SRR9715739Root10.730
SRR9715742Root25.551
SRR9715743Root24.136

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h50.823
SRR8749028MeJA induced 9h22.718
SRR8749029MeJA induced 9h21.597
SRR8749030Uninduced14.503
SRR8749031Uninduced9.817
SRR8749032Uninduced11.348

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root56.767
SRR8400027Control-Root52.085

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved