Gene detail information of Glyur000024s00006607.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G58040.16.00E-137seven in absentia of Arabidopsis 2
NRXP_004497882.10PREDICTED: E3 ubiquitin-protein ligase SINAT2-like isoform X1 [Cicer arietinum]
Swissprottr|Q9M2P4|SINA2_ARATH0E3 ubiquitin-protein ligase SINAT2
trEMBLtr|A0A072VI80|A0A072VI80_MEDTR0E3 ubiquitin-protein ligase {ECO:0000256|RuleBase:RU201113}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00024224697227509-


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K04506SIAH1 EC:2.3.2.27 Ubiquitin mediated proteolysis map04120
MAPK signaling pathway - flymap04013
Wnt signaling pathwaymap04310
p53 signaling pathwaymap04115


Gene Ontology

biological_process

GO:0006511  ubiquitin-dependent protein catabolic process

GO:0007275  multicellular organism development

GO:0016567  protein ubiquitination


cellular_component

GO:0005634  nucleus


molecular_function

GO:0004842  ubiquitin-protein transferase activity

GO:0005515  protein binding

GO:0008270  zinc ion binding

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000024s00006607.1PF03145.11Sina1033029.50E-74


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control4.106
SRR1783600control4.084
SRR1783602moderate drought stress4.110
SRR1811619moderate drought stress3.994

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain5.163
DRR006520Root Summer glycyrrhizin high producing strain5.360
DRR006521Root Winter glycyrrhizin high producing strain9.231
DRR006522Root Winter glycyrrhizin high producing strain8.889
DRR006523Root Summer glycyrrhizin low producing strain7.260
DRR006524Root Summer glycyrrhizin low producing strain7.148
DRR006525Leaf Summer glycyrrhizin high producing strain4.312
DRR006526Leaf Summer glycyrrhizin high producing strain4.261

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)11.406
SRR2868004Drought Stress(Tissue:root)11.578
SRR2967015Control (Tissue:root)12.159

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave6.573
SRR9715740Leave5.170
SRR9715741Leave5.498
SRR9715739Root1.811
SRR9715742Root2.626
SRR9715743Root2.371

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h7.169
SRR8749028MeJA induced 9h7.296
SRR8749029MeJA induced 9h7.732
SRR8749030Uninduced8.409
SRR8749031Uninduced14.219
SRR8749032Uninduced10.255

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root8.236
SRR8400027Control-Root8.248

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved