Gene detail information of Glyur000024s00006613.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G06710.1 | 6.00E-60 | homeobox from Arabidopsis thaliana |
| NR | XP_003533912.1 | 1.39E-162 | PREDICTED: homeobox-leucine zipper protein HAT14-like [Glycine max] |
| Swissprot | tr|P46665|HAT14_ARATH | 2.00E-91 | Homeobox-leucine zipper protein HAT14 |
| trEMBL | tr|I1L2K9|I1L2K9_SOYBN | 5.00E-163 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA09G16790.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00024 | 251711 | 253661 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | HB |
| EAR motif-containing Proteins | HB |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000024s00006613.1 | PF00046.24 | Homeobox | 169 | 223 | 4.60E-15 |
| Glyur000024s00006613.1 | PF02183.13 | HALZ | 225 | 267 | 3.30E-18 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.756 |
| SRR1783600 | control | 1.686 |
| SRR1783602 | moderate drought stress | 3.188 |
| SRR1811619 | moderate drought stress | 3.397 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.674 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.594 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.616 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.346 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.670 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.603 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 4.526 |
| SRR2868004 | Drought Stress(Tissue:root) | 6.577 |
| SRR2967015 | Control (Tissue:root) | 7.238 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 2.397 |
| SRR9715740 | Leave | 0.515 |
| SRR9715741 | Leave | 1.330 |
| SRR9715739 | Root | 0.463 |
| SRR9715742 | Root | 1.242 |
| SRR9715743 | Root | 1.064 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.896 |
| SRR8749028 | MeJA induced 9h | 2.715 |
| SRR8749029 | MeJA induced 9h | 1.322 |
| SRR8749030 | Uninduced | 6.722 |
| SRR8749031 | Uninduced | 6.258 |
| SRR8749032 | Uninduced | 3.911 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 3.460 |
| SRR8400027 | Control-Root | 3.611 |