Gene detail information of Glyur000024s00006614.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G58030.41.00E-75RING/U-box superfamily protein
NRXP_007162336.10hypothetical protein PHAVU_001G143400g [Phaseolus vulgaris]
Swissprottr|Q8GUK7|RMA3_ARATH1.00E-24E3 ubiquitin-protein ligase RMA3
trEMBLtr|V7CYG5|V7CYG5_PHAVU0Uncharacterized protein {ECO:0000313|EMBL:ESW34330.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00024274167275576-


Gene family

Gene familysubfamily
Ubiquitin FamilyRING
EAR motif-containing Proteinsother


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K10666RNF5 EC:2.3.2.27 Protein processing in endoplasmic reticulum map04141


Gene Ontology

molecular_function

GO:0005515  protein binding

GO:0008270  zinc ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000024s00006614.1PF13923.1zf-C3HC4_21752156.60E-11


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control10.635
SRR1783600control11.358
SRR1783602moderate drought stress10.340
SRR1811619moderate drought stress10.535

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain20.098
DRR006520Root Summer glycyrrhizin high producing strain19.749
DRR006521Root Winter glycyrrhizin high producing strain13.796
DRR006522Root Winter glycyrrhizin high producing strain13.225
DRR006523Root Summer glycyrrhizin low producing strain30.870
DRR006524Root Summer glycyrrhizin low producing strain30.184
DRR006525Leaf Summer glycyrrhizin high producing strain8.700
DRR006526Leaf Summer glycyrrhizin high producing strain8.693

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)23.209
SRR2868004Drought Stress(Tissue:root)27.795
SRR2967015Control (Tissue:root)32.877

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave11.725
SRR9715740Leave16.315
SRR9715741Leave15.511
SRR9715739Root25.739
SRR9715742Root20.009
SRR9715743Root22.043

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h9.164
SRR8749028MeJA induced 9h9.739
SRR8749029MeJA induced 9h4.796
SRR8749030Uninduced9.337
SRR8749031Uninduced4.511
SRR8749032Uninduced4.493

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root18.596
SRR8400027Control-Root17.168

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved