Gene detail

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Gene detail information of Glyur000024s00006624.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G06740.1	0	Concanavalin A-like lectin protein kinase family protein
NR	XP_004497890.1	0	PREDICTED: probable L-type lectin-domain containing receptor kinase S.5-like [Cicer arietinum]
COG	YP_004368456.1	4.00E-22	serine/threonine protein kinase [Marinithermus hydrothermalis DSM 14884]
Swissprot	tr\|Q9FG33\|LRKS5_ARATH	0	Probable L-type lectin-domain containing receptor kinase S.5 (Precursor)
trEMBL	tr\|K7LD58\|K7LD58_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA09G16930.2}

Sequence

Transcript Sequence

>Glyur000024s00006624.1
ATGTATTTGTCTTTGCAGCTACTACTCAAATATCAATTATTAGCAGTCATTTTGATTATCATATCCCTTACCAAAGTTGGCTGCTTTTATTTCAATTTCCCTACTTTCCAACCACAGGATGAAGCCAATAGCTTGTTACTGAGCAAAAACTCAAANATATATTTAGATGCCATCCAAATAACCCCAGATATCCGTGGTGAAATAAAGAACTATTCAGGACGTGCTTTCTACAAAAAGCCATACAAACTTTGGAGCAAGAACAACAAAATTGCTTCCTTCAACACCACTTTTGTGCTCAACGTAAGTCCCCAAACATCCCCTGNTGGAGAAGGCTTAGCCTTTATCTTAACAGCAGATACCAATCTCCCAGAAAACAGTGCTGGAGAATGGCTTGGTATTGTGAATGCTTCCACCAATGGAACTTCTCAAGCTGCAATTCTGGCTGTTGAATTTGACACAAGAAAAAGTTCCAATGAAGATGACCCTCACAACCATGTTGGCATCAACATAAACAGCATCCAATCCATCAAACAGGCCACACTAATGAACACTAGTGTCAATATTTCATCTGGTATAAATGTAACAGTGAGAATTGAGTATGCCAATGATATAATATCTGTTTTTGGTTCCATGACTGGAGGAACCATGGAGACCCTTTTGGTATCTCCACCTCTTAACCTTTCTTCCTATCTTAAAGAAGAGGTTTATGTTGGTTTCTCAGCTTCCACAAGCAACTACACACAGCTGAACTGTGTGAGAGCATGGGAATTCAATGGTGTTGATATTGGAGATGGTAATAAAAACCTCTTGTGGGTTTGGATCATGGTTCCGATGGTGATCATCATCATTGGGTTGGTCTTGTTCTTTGTTTTTTATTGGCAAAGGAAACAAAGAATGGAGAAGCCAGAGGATGCATATCCAAGGATAGAGGATCAGATTCTTCAACACTCCTCTATGGCTCCAAAGAAGTATAAGCTAAGTGAAATCAGAAAAGCAACAGGTGGATTCAGCCCTCAGAACAAGCTTGGTCAAGGTGGATTTGGAACTGTCTATAAAGGTACTCTCCTTGATGGAAATAATCACAATAGCAAAGAGATAGCTGTGAAGAGAGTCTCCAAGGACTCGCGTCAAGGGAAGCAAGAGTTCATAGCAGAAGTAACAACAATTGGAAGCCTTCACCACAGGAACCTTGTGAAACTCATTGGTTGGTGCTATGAGAGCAGAGAACTCCTCCTTGTCTATGAGTTCATGCCAAATGGAAGCCTAGACAAGTACCTATTTGGTGATAACAACAACAAAGGGGAACAACAATGTTGTTCAACACTGAATTGGGAAACTAGACACAGTGTGATTCATGGGGTGGCACAAGCATTGGACTATCTTCACAATGGGTGTGAGAAGAGGGTTCTTCACAGAGACATTAAGGCAAGCAACATAATGTTGGACTCAGAATTCAATGCAAAGCTTGGGGATTTTGGACTTGCTCGTACCATTCAGAAGAGGAATGAAACTCACCACTCCACAAAGGAGATTGCAGGAACACCAGGTTACATGGCACCAGAGACCTTTCTTACAGGAAGGGCAACAGTGGAGACTGATGTGTATGCATTTGGTGTTCTTGTGTTGGAGGCTGTGTGTGGTAAAAGGCCATGGAATTATAATAACATGCATAAGAATAATGCTGCACAGGATGATTATAAGAATAGTATTGTGTATTGGGTTTGGGAGCTTTATGGAAAGGGGATGATAGTTAGTGCTGTGGATGAAAGGGTGGTGATTAGAAATAAGGAGGAGGAGGGGGTGGCGATTGAGGAGGAAGAGGTGGAAAGTGTGCTTGTTCTTGGGTTGGCTTGTTGTCATCCAAACCCACACCAGAGGCCCTCCATGAGGACTGTTCTGCAGGTTCTGAATGGGGAAGCACCTCCACCTGTGGTTCCAAAGGAAAGGCCTGCTTTTACCATGTCAATCCTAGGTCTTGTTGCTGCATAA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00024	330944	333350	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.11.1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function GO:0004672 protein kinase activity GO:0005524 ATP binding GO:0016772 transferase activity, transferring phosphorus-containing groups GO:0030246 carbohydrate binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000024s00006624.1	PF00139.14	Lectin_legB	31	258	1.30E-55
Glyur000024s00006624.1	PF00069.20	Pkinase	339	634	1.40E-51

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.239
SRR1783600	control	0.188
SRR1783602	moderate drought stress	0.087
SRR1811619	moderate drought stress	0.061

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.055
DRR006524	Root Summer glycyrrhizin low producing strain	0.001
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.338
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.438

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	6.494
SRR2868004	Drought Stress(Tissue:root)	25.081
SRR2967015	Control (Tissue:root)	17.741

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.034
SRR9715740	Leave	0.063
SRR9715741	Leave	0.131
SRR9715739	Root	0.162
SRR9715742	Root	0.275
SRR9715743	Root	0.180

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.071
SRR8749028	MeJA induced 9h	0.059
SRR8749029	MeJA induced 9h	0.029
SRR8749030	Uninduced	8.784
SRR8749031	Uninduced	7.358
SRR8749032	Uninduced	0.631

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	2.656
SRR8400027	Control-Root	3.642