Gene detail information of Glyur000024s00006635.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G12120.24.00E-163fatty acid desaturase 2
NRKEH41705.10microsomal omega-3 fatty acid desaturase [Medicago truncatula]
COGYP_007147555.12.00E-76fatty acid desaturase [Cylindrospermum stagnale PCC 7417]
Swissprottr|P48631|FD6E2_SOYBN0Omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 2
trEMBLtr|A0A072VUB5|A0A072VUB5_MEDTR0Microsomal omega-3 fatty acid desaturase {ECO:0000313|EMBL:KEH41705.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00024393057397798-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K10256FAD2 EC:1.14.19.6 1.14.19.22 Fatty acid metabolism map01212
Biosynthesis of unsaturated fatty acidsmap01040


Gene Ontology

biological_process

GO:0006629  lipid metabolic process

GO:0055114  oxidation-reduction process


molecular_function

GO:0016717  oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000024s00006635.1PF11960.3DUF347445911.10E-08
Glyur000024s00006635.1PF00487.19FA_desaturase1063688.10E-33


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control9.213
SRR1783600control9.353
SRR1783602moderate drought stress4.532
SRR1811619moderate drought stress4.486

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain0.000
DRR006520Root Summer glycyrrhizin high producing strain0.000
DRR006521Root Winter glycyrrhizin high producing strain0.093
DRR006522Root Winter glycyrrhizin high producing strain0.001
DRR006523Root Summer glycyrrhizin low producing strain0.000
DRR006524Root Summer glycyrrhizin low producing strain0.000
DRR006525Leaf Summer glycyrrhizin high producing strain1.558
DRR006526Leaf Summer glycyrrhizin high producing strain1.531

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)19.235
SRR2868004Drought Stress(Tissue:root)21.024
SRR2967015Control (Tissue:root)18.017

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave5.461
SRR9715740Leave0.733
SRR9715741Leave1.164
SRR9715739Root26.874
SRR9715742Root7.843
SRR9715743Root14.382

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.621
SRR8749028MeJA induced 9h2.656
SRR8749029MeJA induced 9h0.757
SRR8749030Uninduced2.274
SRR8749031Uninduced1.280
SRR8749032Uninduced1.035

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root30.723
SRR8400027Control-Root16.065

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved