Gene detail information of Glyur000024s00006637.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G12810.10SNF2 domain-containing protein / helicase domain-containing protein
NRXP_004497900.10PREDICTED: helicase SRCAP-like [Cicer arietinum]
COGYP_007297659.16.00E-50DNA/RNA helicase, superfamily II, SNF2 family [Thermoanaerobacterium thermosaccharolyticum M0795]
Swissprottr|Q7X9V2|PIE1_ARATH0Protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1
trEMBLtr|K7K937|K7K937_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA02G29380.3} (Fragment)

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00024404257421293-


Gene family

Gene familysubfamily
Transcription Factors FamilySNF2


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0003677  DNA binding

GO:0005524  ATP binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000024s00006637.1PF07529.8HSA27931.20E-15
Glyur000024s00006637.1PF00176.18SNF2_N5238094.00E-75
Glyur000024s00006637.1PF00271.26Helicase_C109411713.20E-15


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control7.839
SRR1783600control7.963
SRR1783602moderate drought stress10.361
SRR1811619moderate drought stress10.155

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain6.762
DRR006520Root Summer glycyrrhizin high producing strain6.763
DRR006521Root Winter glycyrrhizin high producing strain10.140
DRR006522Root Winter glycyrrhizin high producing strain9.788
DRR006523Root Summer glycyrrhizin low producing strain8.143
DRR006524Root Summer glycyrrhizin low producing strain8.206
DRR006525Leaf Summer glycyrrhizin high producing strain3.685
DRR006526Leaf Summer glycyrrhizin high producing strain3.671

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)14.082
SRR2868004Drought Stress(Tissue:root)15.540
SRR2967015Control (Tissue:root)15.914

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave7.919
SRR9715740Leave8.983
SRR9715741Leave10.122
SRR9715739Root1.307
SRR9715742Root9.469
SRR9715743Root8.047

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h9.632
SRR8749028MeJA induced 9h14.524
SRR8749029MeJA induced 9h7.231
SRR8749030Uninduced8.319
SRR8749031Uninduced6.851
SRR8749032Uninduced5.593

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root14.690
SRR8400027Control-Root13.926

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved