Gene detail information of Glyur000024s00006647.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G42200.1 | 4.00E-37 | squamosa promoter binding protein-like 9 |
| NR | XP_006576852.1 | 2.13E-149 | PREDICTED: squamosa promoter-binding-like protein 9-like isoform X2 [Glycine max] |
| Swissprot | tr|Q700W2|SPL9_ARATH | 8.00E-50 | Squamosa promoter-binding-like protein 9 |
| trEMBL | tr|K7KF17|K7KF17_SOYBN | 8.00E-150 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA03G29901.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00024 | 480678 | 485268 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | SBP |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000024s00006647.1 | PF03110.9 | SBP | 57 | 103 | 3.60E-20 |
| Glyur000024s00006647.1 | PF03110.9 | SBP | 117 | 153 | 3.50E-14 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.934 |
| SRR1783600 | control | 0.964 |
| SRR1783602 | moderate drought stress | 3.416 |
| SRR1811619 | moderate drought stress | 3.366 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.882 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.002 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.383 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.234 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.843 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.957 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.431 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.236 |
| SRR2967015 | Control (Tissue:root) | 0.227 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.195 |
| SRR9715740 | Leave | 0.112 |
| SRR9715741 | Leave | 0.000 |
| SRR9715739 | Root | 0.277 |
| SRR9715742 | Root | 1.124 |
| SRR9715743 | Root | 0.774 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.193 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.057 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.003 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 1.270 |
| SRR8400027 | Control-Root | 1.218 |