Gene detail information of Glyur000024s00006653.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G39140.5 | 2.00E-73 | RING/U-box superfamily protein |
| NR | XP_003539633.1 | 0 | PREDICTED: uncharacterized protein LOC100790241 isoform X1 [Glycine max] |
| trEMBL | tr|I1LVB7|I1LVB7_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA12G36420.7} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00024 | 510775 | 515160 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 15.413 |
| SRR1783600 | control | 15.638 |
| SRR1783602 | moderate drought stress | 18.239 |
| SRR1811619 | moderate drought stress | 17.980 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 22.525 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 22.395 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 136.670 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 132.993 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 30.788 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 30.698 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 12.023 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 11.836 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 28.819 |
| SRR2868004 | Drought Stress(Tissue:root) | 38.527 |
| SRR2967015 | Control (Tissue:root) | 44.486 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 19.823 |
| SRR9715740 | Leave | 23.186 |
| SRR9715741 | Leave | 27.875 |
| SRR9715739 | Root | 6.793 |
| SRR9715742 | Root | 19.417 |
| SRR9715743 | Root | 16.721 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 23.480 |
| SRR8749028 | MeJA induced 9h | 49.590 |
| SRR8749029 | MeJA induced 9h | 24.341 |
| SRR8749030 | Uninduced | 26.613 |
| SRR8749031 | Uninduced | 27.687 |
| SRR8749032 | Uninduced | 20.728 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 31.832 |
| SRR8400027 | Control-Root | 29.431 |