Gene detail information of Glyur000024s00006656.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G17570.11.00E-91Undecaprenyl pyrophosphate synthetase family protein
NRXP_003591942.10Undecaprenyl pyrophosphate synthetase [Medicago truncatula]
COGNP_126263.14.00E-35hypothetical protein PAB0394 [Pyrococcus abyssi GE5]
Swissprottr|Q8S2T1|DDPS6_ARATH3.00E-112Dehydrodolichyl diphosphate synthase 6
trEMBLtr|G7L9D4|G7L9D4_MEDTR0Undecaprenyl pyrophosphate synthase {ECO:0000313|EMBL:AET03602.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00024534197536559-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K11778DHDDS, RER2, SRT1 EC:2.5.1.87 Terpenoid backbone biosynthesis map00900


Gene Ontology

molecular_function

GO:0016765  transferase activity, transferring alkyl or aryl (other than methyl) groups



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000024s00006656.1PF01255.14Prenyltransf543654.20E-74


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control7.953
SRR1783600control7.952
SRR1783602moderate drought stress8.663
SRR1811619moderate drought stress8.904

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain14.692
DRR006520Root Summer glycyrrhizin high producing strain14.689
DRR006521Root Winter glycyrrhizin high producing strain22.918
DRR006522Root Winter glycyrrhizin high producing strain22.668
DRR006523Root Summer glycyrrhizin low producing strain38.456
DRR006524Root Summer glycyrrhizin low producing strain38.446
DRR006525Leaf Summer glycyrrhizin high producing strain10.133
DRR006526Leaf Summer glycyrrhizin high producing strain9.768

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)12.172
SRR2868004Drought Stress(Tissue:root)16.624
SRR2967015Control (Tissue:root)17.695

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave21.674
SRR9715740Leave31.123
SRR9715741Leave30.750
SRR9715739Root8.038
SRR9715742Root16.962
SRR9715743Root16.177

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h17.444
SRR8749028MeJA induced 9h18.393
SRR8749029MeJA induced 9h22.221
SRR8749030Uninduced26.415
SRR8749031Uninduced28.038
SRR8749032Uninduced27.389

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root12.956
SRR8400027Control-Root14.641

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved