Gene detail information of Glyur000024s00006658.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G35630.15.00E-172phosphoserine aminotransferase
NRXP_004509428.10PREDICTED: phosphoserine aminotransferase, chloroplastic-like [Cicer arietinum]
COGYP_003524682.16.00E-133phosphoserine aminotransferase [Sideroxydans lithotrophicus ES-1]
Swissprottr|Q96255|SERB1_ARATH0Phosphoserine aminotransferase 1, chloroplastic (Precursor)
trEMBLtr|I1JCA9|I1JCA9_SOYBN0Phosphoserine aminotransferase {ECO:0000256|RuleBase:RU004505}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00024555519557228+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00831serC, PSAT1 EC:2.6.1.52 Carbon metabolism map01200
Biosynthesis of amino acidsmap01230
Methane metabolismmap00680
Glycine, serine and threonine metabolismmap00260
Vitamin B6 metabolismmap00750


Gene Ontology

biological_process

GO:0006564  L-serine biosynthetic process

GO:0008152  metabolic process


molecular_function

GO:0003824  catalytic activity

GO:0004648  O-phospho-L-serine:2-oxoglutarate aminotransferase activity

GO:0030170  pyridoxal phosphate binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000024s00006658.1PF00266.14Aminotran_5771622.40E-10
Glyur000024s00006658.1PF00266.14Aminotran_51873993.90E-28


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control173.731
SRR1783600control159.282
SRR1783602moderate drought stress77.390
SRR1811619moderate drought stress70.880

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain158.907
DRR006520Root Summer glycyrrhizin high producing strain179.115
DRR006521Root Winter glycyrrhizin high producing strain340.677
DRR006522Root Winter glycyrrhizin high producing strain331.311
DRR006523Root Summer glycyrrhizin low producing strain120.957
DRR006524Root Summer glycyrrhizin low producing strain120.058
DRR006525Leaf Summer glycyrrhizin high producing strain38.050
DRR006526Leaf Summer glycyrrhizin high producing strain38.374

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)120.405
SRR2868004Drought Stress(Tissue:root)75.020
SRR2967015Control (Tissue:root)62.509

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave34.027
SRR9715740Leave26.409
SRR9715741Leave41.278
SRR9715739Root118.350
SRR9715742Root221.923
SRR9715743Root200.478

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h172.449
SRR8749028MeJA induced 9h246.510
SRR8749029MeJA induced 9h357.870
SRR8749030Uninduced295.114
SRR8749031Uninduced132.153
SRR8749032Uninduced360.482

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root122.289
SRR8400027Control-Root152.978

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved