Gene detail information of Glyur000024s00006660.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G35640.13.00E-77serine acetyltransferase 3;2
NRXP_007157983.13.35E-112hypothetical protein PHAVU_002G114700g [Phaseolus vulgaris]
COGYP_526558.17.00E-68serine O-acetyltransferase [Saccharophagus degradans 2-40]
Swissprottr|Q10S58|SAT2_ORYSJ9.00E-101Probable serine acetyltransferase 2
trEMBLtr|V7CIE8|V7CIE8_PHAVU1.00E-112Uncharacterized protein {ECO:0000313|EMBL:ESW29977.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00024557961560655-


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00640cysE EC:2.3.1.30 Carbon metabolism map01200
Biosynthesis of amino acidsmap01230
Sulfur metabolismmap00920
Cysteine and methionine metabolismmap00270
Biofilm formation - Vibrio choleraemap05111


Gene Ontology

biological_process

GO:0006535  cysteine biosynthetic process from serine


cellular_component

GO:0005737  cytoplasm


molecular_function

GO:0009001  serine O-acetyltransferase activity

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000024s00006660.1PF06426.9SATase_N271051.90E-20
Glyur000024s00006660.1PF00132.19Hexapep1912242.20E-08


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control0.033
SRR1783600control0.083
SRR1783602moderate drought stress0.000
SRR1811619moderate drought stress0.000

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain0.418
DRR006520Root Summer glycyrrhizin high producing strain0.570
DRR006521Root Winter glycyrrhizin high producing strain0.000
DRR006522Root Winter glycyrrhizin high producing strain0.000
DRR006523Root Summer glycyrrhizin low producing strain0.446
DRR006524Root Summer glycyrrhizin low producing strain0.302
DRR006525Leaf Summer glycyrrhizin high producing strain2.662
DRR006526Leaf Summer glycyrrhizin high producing strain2.692

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)3.837
SRR2868004Drought Stress(Tissue:root)7.413
SRR2967015Control (Tissue:root)2.815

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave0.520
SRR9715740Leave0.534
SRR9715741Leave0.926
SRR9715739Root0.000
SRR9715742Root0.209
SRR9715743Root0.167

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.041
SRR8749028MeJA induced 9h0.000
SRR8749029MeJA induced 9h0.174
SRR8749030Uninduced0.182
SRR8749031Uninduced0.088
SRR8749032Uninduced0.213

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root0.392
SRR8400027Control-Root0.664

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved