Gene detail information of Glyur000024s00006661.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G35260.11.00E-149isocitrate dehydrogenase 1
NRXP_003629164.10Isocitrate dehydrogenase [Medicago truncatula]
COGYP_004102003.12.00E-88isocitrate dehydrogenase [Thermaerobacter marianensis DSM 12885]
Swissprottr|Q8LFC0|IDH1_ARATH0Isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial (Precursor)
trEMBLtr|G7L9H2|G7L9H2_MEDTR0NAD-dependent isocitrate dehydrogenase {ECO:0000313|EMBL:AET03640.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00024563029566411+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00030IDH3 EC:1.1.1.41 Carbon metabolism map01200
2-Oxocarboxylic acid metabolismmap01210
Biosynthesis of amino acidsmap01230
Citrate cycle (TCA cycle)map00020


Gene Ontology

biological_process

GO:0055114  oxidation-reduction process


molecular_function

GO:0000287  magnesium ion binding

GO:0016616  oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor

GO:0051287  NAD binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000024s00006661.1PF00180.15Iso_dh1463423.80E-53


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control33.758
SRR1783600control33.706
SRR1783602moderate drought stress23.754
SRR1811619moderate drought stress23.773

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain36.812
DRR006520Root Summer glycyrrhizin high producing strain35.343
DRR006521Root Winter glycyrrhizin high producing strain29.307
DRR006522Root Winter glycyrrhizin high producing strain28.973
DRR006523Root Summer glycyrrhizin low producing strain40.019
DRR006524Root Summer glycyrrhizin low producing strain41.782
DRR006525Leaf Summer glycyrrhizin high producing strain30.386
DRR006526Leaf Summer glycyrrhizin high producing strain30.002

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)87.051
SRR2868004Drought Stress(Tissue:root)67.573
SRR2967015Control (Tissue:root)68.555

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave62.626
SRR9715740Leave46.718
SRR9715741Leave86.832
SRR9715739Root32.740
SRR9715742Root38.703
SRR9715743Root38.390

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h35.776
SRR8749028MeJA induced 9h31.034
SRR8749029MeJA induced 9h28.944
SRR8749030Uninduced26.024
SRR8749031Uninduced17.358
SRR8749032Uninduced23.855

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root59.353
SRR8400027Control-Root59.713

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved