Gene detail

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Gene detail information of Glyur000025s00003303.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G42120.1	0	Concanavalin A-like lectin protein kinase family protein
NR	XP_004496496.1	0	PREDICTED: L-type lectin-domain containing receptor kinase S.6-like [Cicer arietinum]
COG	YP_004571825.1	2.00E-24	serine/threonine protein kinase [Microlunatus phosphovorus NM-1]
Swissprot	tr\|Q9FHX3\|LRKS6_ARATH	0	L-type lectin-domain containing receptor kinase S.6 (Precursor)
trEMBL	tr\|G7ID26\|G7ID26_MEDTR	0	Lectin receptor kinase {ECO:0000313\|EMBL:AES62400.1}

Sequence

Transcript Sequence

>Glyur000025s00003303.1
ATGCGACGTCGTCACTCTTTGGTGCTCTTATGGATCCCTTTCTTTCTCTTCATTTTCACCAACAACAACCTCATCTTCTCCCTCCCTNTCTTGCCTTCAGAAAACGTCACGCTCTTCGGAGACGCCACCTACACCGACAACGCCATTAGCCTCACCAACGAAGAACTCACTTGTCTTCCTTCTTCTTCGGGCACGGGAAGAGCTTTCTTCGCATACCCAGTTCGCTTTCTTGATCCCACAACAAACTCCACCGCTTCATTCTCATGTCGTTTCTCTTTCTCAATCATTTCCTCATCTTCTTGCCCTTCTCCCGGTGACGGCATTGCCTTTCTCATATCCTCAAGCACCGAGTTCTCAACTCTCTCTGGGTACATGGGTCTTCCCGCACCGCAACAAGATTCTTACTTTGCGGTGGAATTCGACACAAGTTTCGACCCTTCCCTCGGTGACATCAATGGGAACCACGTCGGCATTGACGTCAGCAATGTCGTGTCTTTTGCCTCCGTGGATGCACTTTCTCGTGGGATTGACCTCAAGAGTGGGAAACTCATCACTGCTTGGATTGAATACAGAGATGCCATGAAGATGGTTCGTGTTTGGGTTGGTTACTCTTCTTCAACCAGGCCTTCAAGTCCAATTCTTGCTTCACAGATTGACCTCACTGAGAAATTCAACGAGTTCATGCACGTGGGTTTCTCTGCCTCCAATGGCCANGGTTCTGGTGTTCACCTTGTTCATAATTGGCAATTCAAGACTTTGGGGTATTCCCATTCAGTGAGTCCTATTGATATGGTAGGAGAAGGTGACTGTTTCTTGTGTTACACAGGGGATTCCGATTCAAGTTTAAACAGAAGGAAGAAGATTGGGGAGATAGCTCTTGGATTGGGAGGGATAACGGCTTTGGTAATGTCAGTATTGGCAGCAGCTGTTGTGGTGTGTGTTTACTTGAGAAAGAGAAAGGGTTGTGGTGGTGTTAGTGTTAGCCAAAGTTGTAGATTTCAGAACAATAAAGTTCCCATGAGGTTGTCACTTTCAGAGATCAAATCTGCCACATTGGGGTTTAATAGAGATAGGCTTGTCGGAGAAGGTGCATCTGCAAAGGTTTATAAAGGGTCTCTTCCATTTGGCGGCGGCGATGTGGCGGTGAAGAGATTTGATAGAGATGTTGATGGTTTGGACTGTTTGCACAACCCTTTTGCCACTGAGTTTGCTACTATGGTTGGTTGCTTGAGGCACAAGAACTTGGTTCAGCTTAAAGGGTGGTGTTGTGAGGGGAGTGAGTTGGTTTTGGTTTATGAGTATCTACCCAATGGGAGCCTCAATAAGGTTCTGCATAGGAACTTCAATTCTTCAATTGTGCTTTCTTGGAAGCAAAGGGTTAATATAGTTCTAGGGGTTGCTTCTGCGCTTACCTATCTTCATGAAGAATGTGAGAGGCAAATCATTCATAGGGATGTGAAGACTTGTAATATAATGCTTGATGCTGATTTCACTGCCAAGCTTGGGGATTTTGGGCTTGCTGAAGTGTATGAACATAGTTCTAGCACAAGGGATGCTACTATACCGGCTGGAACAATGGGGTATCTNGCTCCTGAGTATGTTTATTCTGGTGTTCCTACAGTGAAGACCGATGTGTACAGCTTTGGAGTGGTGATGATAGAGGTGGCAACTGGGAGGAAGCCTGTGGAAGATGATGGCACTGTGGTTGCTGATTATGTGTGGAACTTGTGGGAGAGAAATAGGCTCATTGAGGCTGCTGATCCAAGATTGATGGGGAGGTTTGATGCATTGGAGATGGAAATGATGCTCTTGGTGGGGCTTCTTTGTGTACACCCTGACTTTGATAAGAGGCCAAGAGTCAGAGATGCAGCTAGGATGCTTAAGAAAGAAGCACCAATTCCACTGTTGCCTCCAAGTAAACCAAGGGTGAGAATTAGGCCTATTTGTCTAAGTGATGATACACCTGAAACACAGGATGTTGTTGGGGATTGGCTCAGTACAGATGAGGCTCCATATTTGACTCCTAGGAGCCATCAATAA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00025	148775	151752	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.11.1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function GO:0004672 protein kinase activity GO:0005524 ATP binding GO:0016772 transferase activity, transferring phosphorus-containing groups GO:0030246 carbohydrate binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000025s00003303.1	PF00139.14	Lectin_legB	26	251	4.30E-58
Glyur000025s00003303.1	PF00069.20	Pkinase	356	568	1.30E-43

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.333
SRR1783600	control	0.328
SRR1783602	moderate drought stress	0.432
SRR1811619	moderate drought stress	0.382

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.213
DRR006520	Root Summer glycyrrhizin high producing strain	0.211
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.860
DRR006524	Root Summer glycyrrhizin low producing strain	0.855
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.091
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.090

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	1.667
SRR2868004	Drought Stress(Tissue:root)	0.563
SRR2967015	Control (Tissue:root)	0.390

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.189
SRR9715740	Leave	0.000
SRR9715741	Leave	0.128
SRR9715739	Root	1.000
SRR9715742	Root	0.632
SRR9715743	Root	0.863

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.239
SRR8749028	MeJA induced 9h	0.154
SRR8749029	MeJA induced 9h	0.176
SRR8749030	Uninduced	0.159
SRR8749031	Uninduced	0.056
SRR8749032	Uninduced	0.055

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	1.658
SRR8400027	Control-Root	2.240