Gene detail information of Glyur000025s00003307.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G24090.13.00E-82chitinase A
NRXP_003592154.11.68E-173Chitinase [Medicago truncatula]
COGNP_902605.11.00E-07chitinase [Chromobacterium violaceum ATCC 12472]
Swissprottr|P36908|CHIA_CICAR3.00E-165Acidic endochitinase (Precursor)
trEMBLtr|G7ID31|G7ID31_MEDTR6.00E-174Chitinase {ECO:0000313|EMBL:AES62405.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00025166480167373+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01183E3.2.1.14 EC:3.2.1.14 Amino sugar and nucleotide sugar metabolism map00520


Gene Ontology

biological_process

GO:0005975  carbohydrate metabolic process


molecular_function

GO:0004553  hydrolase activity, hydrolyzing O-glycosyl compounds


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000025s00003307.1PF00704.23Glyco_hydro_18302476.10E-34


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control8.991
SRR1783600control9.244
SRR1783602moderate drought stress5.079
SRR1811619moderate drought stress5.079

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain4.247
DRR006520Root Summer glycyrrhizin high producing strain4.198
DRR006521Root Winter glycyrrhizin high producing strain0.746
DRR006522Root Winter glycyrrhizin high producing strain0.973
DRR006523Root Summer glycyrrhizin low producing strain1.443
DRR006524Root Summer glycyrrhizin low producing strain1.730
DRR006525Leaf Summer glycyrrhizin high producing strain57.855
DRR006526Leaf Summer glycyrrhizin high producing strain55.868

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)35.218
SRR2868004Drought Stress(Tissue:root)38.977
SRR2967015Control (Tissue:root)38.995

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave101.811
SRR9715740Leave152.140
SRR9715741Leave124.800
SRR9715739Root51.746
SRR9715742Root39.479
SRR9715743Root40.517

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h450.625
SRR8749028MeJA induced 9h1767.402
SRR8749029MeJA induced 9h967.275
SRR8749030Uninduced3016.363
SRR8749031Uninduced1765.897
SRR8749032Uninduced1270.867

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root41.207
SRR8400027Control-Root20.809

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved