Gene detail information of Glyur000025s00003309.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G24090.15.00E-51chitinase A
NRCAA88593.13.41E-139chitinase homologue [Sesbania rostrata]
Swissprottr|P36908|CHIA_CICAR2.00E-72Acidic endochitinase (Precursor)
trEMBLtr|Q41401|Q41401_SESRO1.00E-139Chitinase homologue {ECO:0000313|EMBL:CAA88593.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00025171472172684-


Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyGH18


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01183E3.2.1.14 EC:3.2.1.14 Amino sugar and nucleotide sugar metabolism map00520


Gene Ontology

biological_process

GO:0005975  carbohydrate metabolic process


molecular_function

GO:0004553  hydrolase activity, hydrolyzing O-glycosyl compounds


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000025s00003309.1PF00704.23Glyco_hydro_18391624.30E-12


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control9864.823
SRR1783600control9673.037
SRR1783602moderate drought stress21558.535
SRR1811619moderate drought stress20996.578

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain4231.136
DRR006520Root Summer glycyrrhizin high producing strain4190.587
DRR006521Root Winter glycyrrhizin high producing strain6.473
DRR006522Root Winter glycyrrhizin high producing strain6.022
DRR006523Root Summer glycyrrhizin low producing strain426.039
DRR006524Root Summer glycyrrhizin low producing strain439.851
DRR006525Leaf Summer glycyrrhizin high producing strain22.367
DRR006526Leaf Summer glycyrrhizin high producing strain20.777

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)38.574
SRR2868004Drought Stress(Tissue:root)18.199
SRR2967015Control (Tissue:root)19.165

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave203.539
SRR9715740Leave44.960
SRR9715741Leave57.916
SRR9715739Root8021.189
SRR9715742Root12243.903
SRR9715743Root10952.458

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h4.884
SRR8749028MeJA induced 9h21.916
SRR8749029MeJA induced 9h5.719
SRR8749030Uninduced17.284
SRR8749031Uninduced10.517
SRR8749032Uninduced28.123

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root2514.819
SRR8400027Control-Root2492.573

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved