Gene detail information of Glyur000025s00003312.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G24090.13.00E-108chitinase A
NRXP_003536440.12.90E-162PREDICTED: hevamine-A-like [Glycine max]
COGNP_902605.14.00E-13chitinase [Chromobacterium violaceum ATCC 12472]
Swissprottr|P23472|CHLY_HEVBR1.00E-139Lysozyme (Precursor)
trEMBLtr|I1LDJ0|I1LDJ0_SOYBN1.00E-162Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA10G37200.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00025193046193894+


Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyGH18


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01183E3.2.1.14 EC:3.2.1.14 Amino sugar and nucleotide sugar metabolism map00520


Gene Ontology

biological_process

GO:0005975  carbohydrate metabolic process


molecular_function

GO:0004553  hydrolase activity, hydrolyzing O-glycosyl compounds


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000025s00003312.1PF00704.23Glyco_hydro_18112321.80E-29


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control1.668
SRR1783600control1.479
SRR1783602moderate drought stress1.074
SRR1811619moderate drought stress1.248

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain0.764
DRR006520Root Summer glycyrrhizin high producing strain0.507
DRR006521Root Winter glycyrrhizin high producing strain0.263
DRR006522Root Winter glycyrrhizin high producing strain0.257
DRR006523Root Summer glycyrrhizin low producing strain0.650
DRR006524Root Summer glycyrrhizin low producing strain1.040
DRR006525Leaf Summer glycyrrhizin high producing strain1.427
DRR006526Leaf Summer glycyrrhizin high producing strain1.746

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)97.052
SRR2868004Drought Stress(Tissue:root)134.894
SRR2967015Control (Tissue:root)163.021

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave11.976
SRR9715740Leave11.973
SRR9715741Leave8.325
SRR9715739Root8.287
SRR9715742Root3.337
SRR9715743Root4.086

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h164.765
SRR8749028MeJA induced 9h306.445
SRR8749029MeJA induced 9h121.154
SRR8749030Uninduced254.142
SRR8749031Uninduced49.749
SRR8749032Uninduced73.085

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root6.000
SRR8400027Control-Root6.832

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved