Gene detail information of Glyur000025s00003315.2


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G49660.14.00E-08Transducin/WD40 repeat-like superfamily protein
NRXP_004496504.10PREDICTED: WD repeat-containing protein 91 homolog [Cicer arietinum]
COGYP_007081240.12.00E-08WD40 repeat-containing protein [Pleurocapsa sp. PCC 7327]
trEMBLtr|V7BF27|V7BF27_PHAVU0Uncharacterized protein {ECO:0000313|EMBL:ESW15503.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00025211990218963-


Gene family

Gene familysubfamily
Ubiquitin FamilyDWD


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0005515  protein binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000025s00003315.2PF00400.27WD403183512.20E-10
Glyur000025s00003315.2PF00400.27WD405585837.50E-05


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control7.842
SRR1783600control7.626
SRR1783602moderate drought stress8.686
SRR1811619moderate drought stress9.162

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain7.068
DRR006520Root Summer glycyrrhizin high producing strain6.642
DRR006521Root Winter glycyrrhizin high producing strain11.374
DRR006522Root Winter glycyrrhizin high producing strain10.909
DRR006523Root Summer glycyrrhizin low producing strain6.525
DRR006524Root Summer glycyrrhizin low producing strain6.268
DRR006525Leaf Summer glycyrrhizin high producing strain4.310
DRR006526Leaf Summer glycyrrhizin high producing strain4.477

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)12.648
SRR2868004Drought Stress(Tissue:root)14.539
SRR2967015Control (Tissue:root)15.378

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave8.445
SRR9715740Leave6.694
SRR9715741Leave8.468
SRR9715739Root3.417
SRR9715742Root6.605
SRR9715743Root5.221

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h5.664
SRR8749028MeJA induced 9h8.402
SRR8749029MeJA induced 9h4.330
SRR8749030Uninduced5.818
SRR8749031Uninduced4.198
SRR8749032Uninduced3.405

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root14.857
SRR8400027Control-Root14.934

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved