Gene detail information of Glyur000025s00003338.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G52660.1 | 2.00E-80 | Homeodomain-like superfamily protein |
| NR | XP_006589522.1 | 1.41E-178 | PREDICTED: transcription factor ASG4-like isoform X1 [Glycine max] |
| Swissprot | tr|Q8H0W3|RVE6_ARATH | 2.00E-111 | Protein REVEILLE 6 |
| trEMBL | tr|K7LKZ8|K7LKZ8_SOYBN | 5.00E-179 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA10G37520.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00025 | 340509 | 347735 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | MYB-related |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000025s00003338.1 | PF00249.26 | Myb_DNA-binding | 48 | 92 | 7.50E-10 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.532 |
| SRR1783600 | control | 3.723 |
| SRR1783602 | moderate drought stress | 4.374 |
| SRR1811619 | moderate drought stress | 4.325 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 14.368 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 14.173 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 71.969 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 69.753 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 23.287 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 23.589 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 21.467 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 21.519 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 8.580 |
| SRR2868004 | Drought Stress(Tissue:root) | 9.703 |
| SRR2967015 | Control (Tissue:root) | 10.334 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 11.140 |
| SRR9715740 | Leave | 9.178 |
| SRR9715741 | Leave | 15.665 |
| SRR9715739 | Root | 0.659 |
| SRR9715742 | Root | 3.748 |
| SRR9715743 | Root | 3.519 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 16.220 |
| SRR8749028 | MeJA induced 9h | 21.324 |
| SRR8749029 | MeJA induced 9h | 22.894 |
| SRR8749030 | Uninduced | 21.395 |
| SRR8749031 | Uninduced | 34.173 |
| SRR8749032 | Uninduced | 29.445 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 8.620 |
| SRR8400027 | Control-Root | 7.408 |