Gene detail information of Glyur000025s00003342.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G25700.13.00E-89beta-hydroxylase 1
NRAIT98181.14.74E-157beta-carotene hydroxylase [Medicago sativa]
COGYP_008147268.12.00E-32hypothetical protein SCE1572_04045 [Sorangium cellulosum So0157-2]
Swissprottr|Q9SZZ8|BCH1_ARATH3.00E-143Beta-carotene 3-hydroxylase 1, chloroplastic (Precursor)
trEMBLtr|A0A097KXR0|A0A097KXR0_MEDSA2.00E-157Beta-carotene hydroxylase {ECO:0000313|EMBL:AIT98181.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00025355687357939+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K15746crtZ EC:1.14.13.129 Carotenoid biosynthesis map00906


Gene Ontology

biological_process

GO:0006633  fatty acid biosynthetic process

GO:0055114  oxidation-reduction process


molecular_function

GO:0005506  iron ion binding

GO:0016491  oxidoreductase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000025s00003342.1PF04116.8FA_hydroxylase1522691.40E-11


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control1.514
SRR1783600control1.502
SRR1783602moderate drought stress0.580
SRR1811619moderate drought stress0.606

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain4.161
DRR006520Root Summer glycyrrhizin high producing strain4.228
DRR006521Root Winter glycyrrhizin high producing strain10.041
DRR006522Root Winter glycyrrhizin high producing strain9.887
DRR006523Root Summer glycyrrhizin low producing strain8.456
DRR006524Root Summer glycyrrhizin low producing strain8.217
DRR006525Leaf Summer glycyrrhizin high producing strain18.123
DRR006526Leaf Summer glycyrrhizin high producing strain17.764

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)5.244
SRR2868004Drought Stress(Tissue:root)4.319
SRR2967015Control (Tissue:root)5.026

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave13.544
SRR9715740Leave6.397
SRR9715741Leave8.440
SRR9715739Root0.594
SRR9715742Root3.356
SRR9715743Root2.166

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h1.890
SRR8749028MeJA induced 9h1.271
SRR8749029MeJA induced 9h0.582
SRR8749030Uninduced0.977
SRR8749031Uninduced0.225
SRR8749032Uninduced0.300

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root1.982
SRR8400027Control-Root4.011

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved