Gene detail information of Glyur000025s00003365.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G49060.13.00E-144U-box domain-containing protein kinase family protein
NRKHN12148.10U-box domain-containing protein 33 [Glycine soja]
COGYP_001958461.13.00E-20hypothetical protein Aasi_1443 [Candidatus Amoebophilus asiaticus 5a2]
Swissprottr|Q94A51|PUB32_ARATH7.00E-169U-box domain-containing protein 32
trEMBLtr|K7N3S5|K7N3S5_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA20G30050.2}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00025473634479564-


Gene family

Gene familysubfamily
Protein Kinases FamilyPPC:1.14.2
Ubiquitin FamilyU_box


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

biological_process

GO:0006468  protein phosphorylation

GO:0016567  protein ubiquitination


molecular_function

GO:0004672  protein kinase activity

GO:0004842  ubiquitin-protein transferase activity

GO:0005524  ATP binding

GO:0016772  transferase activity, transferring phosphorus-containing groups


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000025s00003365.1PF07714.12Pkinase_Tyr3706187.10E-36
Glyur000025s00003365.1PF04564.10U-box6487161.80E-16


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control12.318
SRR1783600control12.349
SRR1783602moderate drought stress15.720
SRR1811619moderate drought stress15.934

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain13.440
DRR006520Root Summer glycyrrhizin high producing strain12.916
DRR006521Root Winter glycyrrhizin high producing strain21.907
DRR006522Root Winter glycyrrhizin high producing strain21.453
DRR006523Root Summer glycyrrhizin low producing strain15.679
DRR006524Root Summer glycyrrhizin low producing strain15.983
DRR006525Leaf Summer glycyrrhizin high producing strain15.235
DRR006526Leaf Summer glycyrrhizin high producing strain15.297

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)21.779
SRR2868004Drought Stress(Tissue:root)24.730
SRR2967015Control (Tissue:root)26.788

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave14.667
SRR9715740Leave14.508
SRR9715741Leave13.696
SRR9715739Root2.111
SRR9715742Root8.147
SRR9715743Root7.919

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h5.409
SRR8749028MeJA induced 9h8.558
SRR8749029MeJA induced 9h3.296
SRR8749030Uninduced3.573
SRR8749031Uninduced2.139
SRR8749032Uninduced2.134

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root18.209
SRR8400027Control-Root16.253

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved