Gene detail information of Glyur000025s00003375.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G23870.3 | 8.00E-150 | Pectinacetylesterase family protein |
| NR | XP_003535610.2 | 0 | PREDICTED: protein notum homolog isoform X1 [Glycine max] |
| trEMBL | tr|K7LL20|K7LL20_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA10G37890.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00025 | 528464 | 538731 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | CE13 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000025s00003375.1 | PF03283.8 | PAE | 22 | 372 | 2.50E-140 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.312 |
| SRR1783600 | control | 2.295 |
| SRR1783602 | moderate drought stress | 1.321 |
| SRR1811619 | moderate drought stress | 1.305 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 10.592 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 10.459 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.864 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.662 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 9.658 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 9.237 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 7.474 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.377 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 20.793 |
| SRR2868004 | Drought Stress(Tissue:root) | 17.833 |
| SRR2967015 | Control (Tissue:root) | 18.518 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 19.877 |
| SRR9715740 | Leave | 20.009 |
| SRR9715741 | Leave | 34.348 |
| SRR9715739 | Root | 0.548 |
| SRR9715742 | Root | 3.673 |
| SRR9715743 | Root | 2.373 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 13.381 |
| SRR8749028 | MeJA induced 9h | 12.839 |
| SRR8749029 | MeJA induced 9h | 5.524 |
| SRR8749030 | Uninduced | 7.540 |
| SRR8749031 | Uninduced | 2.870 |
| SRR8749032 | Uninduced | 2.449 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 10.204 |
| SRR8400027 | Control-Root | 15.319 |