Gene detail information of Glyur000026s00001858.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G19180.10E1 C-terminal related 1
NRXP_004507708.10PREDICTED: NEDD8-activating enzyme E1 catalytic subunit-like [Cicer arietinum]
COGYP_008797957.11.00E-25ubiquitin-activating enzyme E1-like protein [Candidatus Caldiarchaeum subterraneum]
Swissprottr|O65041|UBA3_ARATH0NEDD8-activating enzyme E1 catalytic subunit
trEMBLtr|G7JHZ9|G7JHZ9_MEDTR0NEDD8-activating enzyme E1 catalytic subunit {ECO:0000313|EMBL:AES92586.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold000265521660432+


Gene family

Gene familysubfamily
Ubiquitin FamilyThiF


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K10686UBE1C, UBA3 EC:6.2.1.45 Ubiquitin mediated proteolysis map04120


Gene Ontology

biological_process

GO:0006464  cellular protein modification process

GO:0045116  protein neddylation


molecular_function

GO:0005524  ATP binding

GO:0008641  small protein activating enzyme activity

GO:0016881  acid-amino acid ligase activity

GO:0019781  NEDD8 activating enzyme activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000026s00001858.1PF00899.16ThiF431851.10E-40
Glyur000026s00001858.1PF10585.4UBA_e1_thiolCys1912358.30E-12
Glyur000026s00001858.1PF02134.16UBACT2413066.40E-25
Glyur000026s00001858.1PF08825.5E2_bind3444353.80E-22


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control37.711
SRR1783600control37.612
SRR1783602moderate drought stress41.148
SRR1811619moderate drought stress41.013

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain58.392
DRR006520Root Summer glycyrrhizin high producing strain57.622
DRR006521Root Winter glycyrrhizin high producing strain27.193
DRR006522Root Winter glycyrrhizin high producing strain26.357
DRR006523Root Summer glycyrrhizin low producing strain59.528
DRR006524Root Summer glycyrrhizin low producing strain59.916
DRR006525Leaf Summer glycyrrhizin high producing strain22.538
DRR006526Leaf Summer glycyrrhizin high producing strain22.509

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)58.201
SRR2868004Drought Stress(Tissue:root)50.155
SRR2967015Control (Tissue:root)43.723

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave32.699
SRR9715740Leave43.507
SRR9715741Leave38.321
SRR9715739Root27.711
SRR9715742Root36.463
SRR9715743Root38.182

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h38.028
SRR8749028MeJA induced 9h27.314
SRR8749029MeJA induced 9h26.514
SRR8749030Uninduced23.034
SRR8749031Uninduced13.876
SRR8749032Uninduced23.983

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root46.437
SRR8400027Control-Root43.030

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved