Gene detail information of Glyur000026s00001862.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G14220.1 | 2.00E-32 | RING-H2 group F1A |
| NR | XP_006584068.1 | 1.46E-124 | PREDICTED: E3 ubiquitin-protein ligase RHF1A-like [Glycine max] |
| Swissprot | tr|Q4TU14|RHF1A_ARATH | 2.00E-65 | E3 ubiquitin-protein ligase RHF1A |
| trEMBL | tr|I1KNA6|I1KNA6_SOYBN | 5.00E-125 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA07G38800.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00026 | 68257 | 70794 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000026s00001862.1 | PF13639.1 | zf-RING_2 | 28 | 69 | 2.70E-11 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.229 |
| SRR1783600 | control | 3.030 |
| SRR1783602 | moderate drought stress | 5.566 |
| SRR1811619 | moderate drought stress | 5.214 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.459 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.389 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.119 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.218 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.040 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 2.160 |
| SRR2868004 | Drought Stress(Tissue:root) | 1.173 |
| SRR2967015 | Control (Tissue:root) | 1.816 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.299 |
| SRR9715740 | Leave | 0.330 |
| SRR9715741 | Leave | 0.542 |
| SRR9715739 | Root | 0.292 |
| SRR9715742 | Root | 0.150 |
| SRR9715743 | Root | 0.221 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.205 |
| SRR8749028 | MeJA induced 9h | 0.546 |
| SRR8749029 | MeJA induced 9h | 0.534 |
| SRR8749030 | Uninduced | 1.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.113 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 2.750 |
| SRR8400027 | Control-Root | 4.978 |