Gene detail

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Gene detail information of Glyur000026s00001865.1

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT5G19220.1	ADP glucose pyrophosphorylase large subunit 1
NR	NP_001241391.1	uncharacterized protein LOC100810451 [Glycine max]
COG	YP_007115345.1	Glucose-1-phosphate adenylyltransferase [Oscillatoria nigro-viridis PCC 7112]
Swissprot	tr\|P55229\|GLGL1_ARATH	Glucose-1-phosphate adenylyltransferase large subunit 1, chloroplastic (Precursor)
trEMBL	tr\|C6TE56\|C6TE56_SOYBN	Glucose-1-phosphate adenylyltransferase {ECO:0000256\|RuleBase:RU003565}

Sequence

Transcript Sequence

>Glyur000026s00001865.1
GTTGAGGACAGGAAGGACTAAATCCATAGAATATTCGTTAATTAATGGATTTTGAAGGACCTAGTTCGTCATTTGACACGTGCGCTTCTCTGAGCACTTGCTAGTTGCTAACCAAACTGGTGGATGCAATTGAATTTCTCGGATAACGTCGTGGCCCAATCCTCCAATACCCTGATATGCATGCAAGCAAATCCCCACTCTTCTCTACACACTACACACACTGCTTCATGTGTAGGAGGACATTGGACAAGGTCTGAAATTCCCATTTTCTCCTTTCACGGTGACCGGATAAAATGGCAGTCTCTGCCGGCGGCCAGATAATGCTCTCGTCTACCGTCCAATTACGGGAAGCAACAGGACTGGGCGGTAGGAAGTGGGGGCTTGTGAAGTTTAGTAATGGAGAAATCATGGGACGCAAGCTTGAGCTACAAGGTTGCGGTGGCAGTGGTGGTCGCACTAAGATTGTTGGGCAACAACATATATGCATGTCTCTCACTGCAGACGTGGCCAGCGAATCTAAGTTGAGAGCGCTAGATATGGAAAGAAGGGAAGCAAGGACAGTTGTGGCAATTATACTCGGTGGAGGAGCTGGAACCCGTCTCTTCCCTCTCACCAAGCGACGAGCCAAGCCTGCTGTTCCTATTGGAGGTGCTTACAGGTTGATTGATGTGCCAATGAGTAACTGCATCAATAGTGGGATCAACAAGGTGTACATTCTCACTCAGTTTAATTCAGCCTCACTCAACAGGCACATTGCACGTGCTTACAACTCTGGTACTGGTGTCACTTTTGGAGATGGCTATGTTGAGGTTCTTGCAGCAACTCAAACTCCAGGGGAGCAAGGTAAAAAGTGGTTTCAGGGTACTGCTGATGCTGTGCGGCAGTTCCACTGGCTCTTTGAGGANCCCAGGAGTAAGGATATTGAGGATGTCTTGATTCTTTCTGGGGATCANCTCTACCGAATGGACTACATGGACTTTGTTCAAAATCACCGAGAGAGTGGTGCAGATATCACTCTCTCTTGTCTACCAATGGATGACAGCCGTGCCTCAGATTTTGGTCTAATGAAGATCGACAATAAAGGAAGGGTCCTTTCATTCAGNGAAAAGCCTAAAGGAGAAGATCTGAAAGCAATGCAAGTAGATACAACCGTTCTGGGTCTTTCTAAGGATGAGGCTCTAGAGAAACCATACATTGCTTCCATGGGAGTGTATGTCTTCAAGAAGGAGATACTTCTTAATCTATTAAGATGGCGCTTTCCGACTGCAAATGACTTTGGATCAGAAGTCATTCCTGCCTCAGCTAAAGAATTTTACATGAAGGCTTATCTCTTCAATGATTACTGGGAGGACATAGGGACCATTAGATCATTCTTTGAGGCAAATCTAGCTCTCACTGAGCATCCTCCCAGATTTAGCTTTTACGATGCAACAAAACCAATGTACACATCAAGGAGAAACTTACCACCATCGAAGATTGACAACAGCAAGATCGTTGATTCAATCATATCACATGGAAGCTTCTTGAATAACTCCTTCATAGAGCATAGTGTAGTTGGAATCAGATCCAGAATAAACTCAAACGTTCATTTAAAGGATACAGTGATGCTTGGNGCTGATTTCTATGAAACTGACGCAGAAGTGNNAGCACTGTTAGCNGAGGGAAGAGTTCCAATAGGAATAGGAGAAAACACAAAAATCAAAGACTGTATTATTGACAAAAATGCTAGAATTGGAAAGAATGTTGTAATAGCAAATTCAGAGGGTATACAAGAGGCTGATAGATCTTCAGAAGGGTTTTACATCCGTTCAGGTGTTACCATTGTATTGAAAAATTCAACAATTGAAGACGGACTCGTCATATAATGAAGTCACCCATCATCTGTCTGACCCATTTTGCCATGGATTTGAGGATGAGATTTTTTTGGTTTGTATGAATTATCAAATTTAAGAAAGGGCATCAAATGTCATTATGTTATCCGA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00026	79838	84427	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00975	glgC	EC:2.7.7.27	Starch and sucrose metabolism	map00500
			Amino sugar and nucleotide sugar metabolism	map00520
			Biofilm formation - Escherichia coli	map02026

Gene Ontology

biological_process

GO:0005978 glycogen biosynthetic process

GO:0009058 biosynthetic process

molecular_function GO:0008878 glucose-1-phosphate adenylyltransferase activity GO:0016779 nucleotidyltransferase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000026s00001865.1	PF00483.18	NTP_transferase	92	369	1.40E-75

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.501
SRR1783600	control	2.378
SRR1783602	moderate drought stress	0.549
SRR1811619	moderate drought stress	0.551

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.229
DRR006522	Root Winter glycyrrhizin high producing strain	0.159
DRR006523	Root Summer glycyrrhizin low producing strain	0.181
DRR006524	Root Summer glycyrrhizin low producing strain	0.181
DRR006525	Leaf Summer glycyrrhizin high producing strain	164.791
DRR006526	Leaf Summer glycyrrhizin high producing strain	163.946

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	0.168
SRR2868004	Drought Stress(Tissue:root)	0.696
SRR2967015	Control (Tissue:root)	0.056

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	92.804
SRR9715740	Leave	135.542
SRR9715741	Leave	78.882
SRR9715739	Root	1.569
SRR9715742	Root	1.535
SRR9715743	Root	1.153

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.491
SRR8749028	MeJA induced 9h	0.125
SRR8749029	MeJA induced 9h	0.252
SRR8749030	Uninduced	0.072
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	24.880
SRR8400027	Control-Root	29.125