Gene detail information of Glyur000026s00001905.4 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G05170.2 | 6.00E-162 | Galactosyltransferase family protein |
| NR | XP_004507687.1 | 0 | PREDICTED: probable beta-1,3-galactosyltransferase 2-like [Cicer arietinum] |
| Swissprot | tr|A8MRC7|B3GT2_ARATH | 0 | Probable beta-1,3-galactosyltransferase 2 |
| trEMBL | tr|V7CAK0|V7CAK0_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW25946.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00026 | 297959 | 302433 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GT31 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000026s00001905.4 | PF13334.1 | DUF4094 | 20 | 39 | 1.50E-05 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 12.616 |
| SRR1783600 | control | 17.580 |
| SRR1783602 | moderate drought stress | 8.927 |
| SRR1811619 | moderate drought stress | 11.867 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 14.784 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 13.292 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 7.422 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 7.494 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 8.806 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 6.852 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.641 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.818 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 9.312 |
| SRR2868004 | Drought Stress(Tissue:root) | 7.890 |
| SRR2967015 | Control (Tissue:root) | 7.629 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 3.596 |
| SRR9715740 | Leave | 2.358 |
| SRR9715741 | Leave | 2.763 |
| SRR9715739 | Root | 2.038 |
| SRR9715742 | Root | 5.985 |
| SRR9715743 | Root | 5.005 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.520 |
| SRR8749028 | MeJA induced 9h | 3.081 |
| SRR8749029 | MeJA induced 9h | 2.405 |
| SRR8749030 | Uninduced | 1.509 |
| SRR8749031 | Uninduced | 0.740 |
| SRR8749032 | Uninduced | 1.010 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 21.450 |
| SRR8400027 | Control-Root | 27.054 |