Gene detail information of Glyur000026s00001914.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G11820.20O-Glycosyl hydrolases family 17 protein
NRXP_003549783.10PREDICTED: glucan endo-1,3-beta-glucosidase 1-like isoform X1 [Glycine max]
Swissprottr|O65399|E131_ARATH0Glucan endo-1,3-beta-glucosidase 1 (Precursor)
trEMBLtr|K7MJE4|K7MJE4_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA17G01601.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00026352050355732+


Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyGH17,CBM43


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K19891GN1_2_3 EC:3.2.1.39 Starch and sucrose metabolism map00500


Gene Ontology

biological_process

GO:0005975  carbohydrate metabolic process


molecular_function

GO:0004553  hydrolase activity, hydrolyzing O-glycosyl compounds


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000026s00001914.1PF00332.13Glyco_hydro_17461728.00E-28
Glyur000026s00001914.1PF00332.13Glyco_hydro_171733471.30E-41
Glyur000026s00001914.1PF07983.8X83654308.60E-14


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control81.441
SRR1783600control82.314
SRR1783602moderate drought stress62.075
SRR1811619moderate drought stress62.266

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain59.896
DRR006520Root Summer glycyrrhizin high producing strain58.892
DRR006521Root Winter glycyrrhizin high producing strain10.941
DRR006522Root Winter glycyrrhizin high producing strain10.790
DRR006523Root Summer glycyrrhizin low producing strain45.267
DRR006524Root Summer glycyrrhizin low producing strain44.938
DRR006525Leaf Summer glycyrrhizin high producing strain4.616
DRR006526Leaf Summer glycyrrhizin high producing strain4.256

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)39.143
SRR2868004Drought Stress(Tissue:root)15.389
SRR2967015Control (Tissue:root)17.782

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave10.701
SRR9715740Leave1.473
SRR9715741Leave2.072
SRR9715739Root45.039
SRR9715742Root50.251
SRR9715743Root47.350

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h24.444
SRR8749028MeJA induced 9h8.149
SRR8749029MeJA induced 9h18.487
SRR8749030Uninduced1.751
SRR8749031Uninduced0.981
SRR8749032Uninduced2.894

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root95.352
SRR8400027Control-Root121.438

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved