Gene detail information of Glyur000026s00001922.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G11860.3 | 1.00E-53 | Glycine cleavage T-protein family |
| NR | ACJ85169.1 | 1.26E-65 | unknown [Medicago truncatula] |
| COG | NP_621988.1 | 5.00E-30 | glycine cleavage system aminomethyltransferase T [Thermoanaerobacter tengcongensis MB4] |
| Swissprot | tr|P49364|GCST_PEA | 3.00E-65 | Aminomethyltransferase, mitochondrial (Precursor) |
| trEMBL | tr|W5ESM6|W5ESM6_WHEAT | 4.00E-67 | Uncharacterized protein {ECO:0000313|EnsemblPlants:Traes_4DS_BBC573653.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00026 | 388420 | 390043 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K00605 | gcvT, AMT | EC:2.1.2.10 | Carbon metabolism | map01200 |
| Glyoxylate and dicarboxylate metabolism | map00630 | |||
| Glycine, serine and threonine metabolism | map00260 | |||
| One carbon pool by folate | map00670 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000026s00001922.1 | PF01571.16 | GCV_T | 5 | 111 | 1.20E-31 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.721 |
| SRR1783600 | control | 0.888 |
| SRR1783602 | moderate drought stress | 0.552 |
| SRR1811619 | moderate drought stress | 0.939 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.782 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.168 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.954 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.208 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.359 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.197 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.996 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.176 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.868 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.277 |
| SRR2967015 | Control (Tissue:root) | 0.391 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 1.967 |
| SRR9715740 | Leave | 0.928 |
| SRR9715741 | Leave | 1.699 |
| SRR9715739 | Root | 0.415 |
| SRR9715742 | Root | 1.825 |
| SRR9715743 | Root | 1.207 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.070 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.008 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 2.185 |
| SRR8400027 | Control-Root | 2.052 |