Gene detail information of Glyur000026s00001923.2


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G11860.30Glycine cleavage T-protein family
NRXP_003529643.10PREDICTED: aminomethyltransferase, mitochondrial-like [Glycine max]
COGYP_420129.15.00E-106glycine cleavage system aminomethyltransferase T [Magnetospirillum magneticum AMB-1]
Swissprottr|P49364|GCST_PEA0Aminomethyltransferase, mitochondrial (Precursor)
trEMBLtr|I1KNF5|I1KNF5_SOYBN0Aminomethyltransferase {ECO:0000256|RuleBase:RU003981}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00026394498398339+


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00605gcvT, AMT EC:2.1.2.10 Carbon metabolism map01200
Glyoxylate and dicarboxylate metabolismmap00630
Glycine, serine and threonine metabolismmap00260
One carbon pool by folatemap00670


Gene Ontology

biological_process

GO:0006546  glycine catabolic process


molecular_function

GO:0004047  aminomethyltransferase activity

GO:0005515  protein binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000026s00001923.2PF01571.16GCV_T1133281.60E-64
Glyur000026s00001923.2PF08669.6GCV_T_C3374292.60E-22


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control60.867
SRR1783600control61.426
SRR1783602moderate drought stress40.384
SRR1811619moderate drought stress40.937

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain51.915
DRR006520Root Summer glycyrrhizin high producing strain52.992
DRR006521Root Winter glycyrrhizin high producing strain14.363
DRR006522Root Winter glycyrrhizin high producing strain14.369
DRR006523Root Summer glycyrrhizin low producing strain33.134
DRR006524Root Summer glycyrrhizin low producing strain33.719
DRR006525Leaf Summer glycyrrhizin high producing strain721.151
DRR006526Leaf Summer glycyrrhizin high producing strain720.578

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)130.804
SRR2868004Drought Stress(Tissue:root)142.427
SRR2967015Control (Tissue:root)93.358

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave398.265
SRR9715740Leave472.765
SRR9715741Leave310.362
SRR9715739Root26.970
SRR9715742Root38.097
SRR9715743Root37.179

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h39.557
SRR8749028MeJA induced 9h51.262
SRR8749029MeJA induced 9h29.343
SRR8749030Uninduced20.014
SRR8749031Uninduced9.874
SRR8749032Uninduced13.884

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root81.798
SRR8400027Control-Root78.758

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved