Gene detail information of Glyur000026s00001945.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G43710.10Pyridoxal phosphate (PLP)-dependent transferases superfamily protein
NRXP_004485538.10PREDICTED: histidine decarboxylase-like isoform X1 [Cicer arietinum]
COGYP_001865119.18.00E-116histidine decarboxylase [Nostoc punctiforme PCC 73102]
Swissprottr|Q6ESZ9|SDC1_ORYSJ0Serine decarboxylase 1
trEMBLtr|I1MDT8|I1MDT8_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA15G05630.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00026514511520244-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01590hdc, HDC EC:4.1.1.22 Histidine metabolism map00340


Gene Ontology

biological_process

GO:0019752  carboxylic acid metabolic process


molecular_function

GO:0003824  catalytic activity

GO:0016831  carboxy-lyase activity

GO:0030170  pyridoxal phosphate binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000026s00001945.1PF00282.14Pyridoxal_deC1694311.00E-19


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control49.861
SRR1783600control52.090
SRR1783602moderate drought stress34.763
SRR1811619moderate drought stress35.145

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain98.905
DRR006520Root Summer glycyrrhizin high producing strain96.774
DRR006521Root Winter glycyrrhizin high producing strain86.916
DRR006522Root Winter glycyrrhizin high producing strain84.507
DRR006523Root Summer glycyrrhizin low producing strain60.288
DRR006524Root Summer glycyrrhizin low producing strain59.861
DRR006525Leaf Summer glycyrrhizin high producing strain27.424
DRR006526Leaf Summer glycyrrhizin high producing strain27.387

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)72.132
SRR2868004Drought Stress(Tissue:root)60.925
SRR2967015Control (Tissue:root)65.095

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave49.914
SRR9715740Leave46.829
SRR9715741Leave55.663
SRR9715739Root68.027
SRR9715742Root78.733
SRR9715743Root75.552

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h28.211
SRR8749028MeJA induced 9h20.414
SRR8749029MeJA induced 9h23.234
SRR8749030Uninduced17.951
SRR8749031Uninduced20.063
SRR8749032Uninduced13.579

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root66.086
SRR8400027Control-Root72.312

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved