Gene detail information of Glyur000026s00001954.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G57190.10phosphatidylserine decarboxylase 2
NRXP_004485545.10PREDICTED: phosphatidylserine decarboxylase proenzyme 3-like [Cicer arietinum]
COGNP_603252.18.00E-62phosphatidylserine decarboxylase [Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
Swissprottr|F4KAK5|PSD2_ARATH0Phosphatidylserine decarboxylase 2 alpha chain
trEMBLtr|I1KUF4|I1KUF4_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G19310.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00026539456548620-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01613psd, PISD EC:4.1.1.65 Glycerophospholipid metabolism map00564


Gene Ontology

biological_process

GO:0008654  phospholipid biosynthetic process


molecular_function

GO:0004609  phosphatidylserine decarboxylase activity

GO:0005509  calcium ion binding

GO:0005515  protein binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000026s00001954.1PF00168.25C2701270.00046
Glyur000026s00001954.1PF13499.1EF-hand_71792374.20E-09
Glyur000026s00001954.1PF02666.10PS_Dcarbxylase4136222.50E-57


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control8.946
SRR1783600control8.889
SRR1783602moderate drought stress13.173
SRR1811619moderate drought stress13.204

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain18.672
DRR006520Root Summer glycyrrhizin high producing strain18.448
DRR006521Root Winter glycyrrhizin high producing strain25.210
DRR006522Root Winter glycyrrhizin high producing strain24.344
DRR006523Root Summer glycyrrhizin low producing strain20.446
DRR006524Root Summer glycyrrhizin low producing strain21.153
DRR006525Leaf Summer glycyrrhizin high producing strain23.339
DRR006526Leaf Summer glycyrrhizin high producing strain23.422

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)22.470
SRR2868004Drought Stress(Tissue:root)29.932
SRR2967015Control (Tissue:root)36.569

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave20.933
SRR9715740Leave27.935
SRR9715741Leave32.748
SRR9715739Root3.626
SRR9715742Root11.179
SRR9715743Root9.495

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h15.462
SRR8749028MeJA induced 9h22.259
SRR8749029MeJA induced 9h16.664
SRR8749030Uninduced12.802
SRR8749031Uninduced5.252
SRR8749032Uninduced6.414

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root24.687
SRR8400027Control-Root25.815

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved