Gene detail information of Glyur000027s00001503.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G55870.1 | 0 | Polynucleotidyl transferase, ribonuclease H-like superfamily protein |
| NR | XP_003530802.1 | 0 | PREDICTED: poly(A)-specific ribonuclease PARN-like isoform X1 [Glycine max] |
| Swissprot | tr|Q9LG26|PARN_ARATH | 0 | Poly(A)-specific ribonuclease PARN |
| trEMBL | tr|K7LAC5|K7LAC5_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G44260.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00027 | 20816 | 25805 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K01148 | PARN | EC:3.1.13.4 | RNA degradation | map03018 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000027s00001503.1 | PF04857.15 | CAF1 | 36 | 466 | 2.60E-59 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.455 |
| SRR1783600 | control | 4.523 |
| SRR1783602 | moderate drought stress | 3.845 |
| SRR1811619 | moderate drought stress | 4.056 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.076 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.974 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.908 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.828 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.425 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.239 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.157 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.111 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 4.949 |
| SRR2868004 | Drought Stress(Tissue:root) | 3.664 |
| SRR2967015 | Control (Tissue:root) | 3.498 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 2.444 |
| SRR9715740 | Leave | 4.448 |
| SRR9715741 | Leave | 2.672 |
| SRR9715739 | Root | 0.550 |
| SRR9715742 | Root | 2.772 |
| SRR9715743 | Root | 2.258 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 7.270 |
| SRR8749028 | MeJA induced 9h | 5.328 |
| SRR8749029 | MeJA induced 9h | 3.428 |
| SRR8749030 | Uninduced | 1.348 |
| SRR8749031 | Uninduced | 0.698 |
| SRR8749032 | Uninduced | 0.570 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 6.268 |
| SRR8400027 | Control-Root | 5.745 |