Gene detail information of Glyur000027s00001507.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G55850.1 | 0 | cellulose synthase like E1 |
| NR | XP_006586145.1 | 0 | PREDICTED: cellulose synthase-like protein E1-like [Glycine max] |
| COG | YP_007129238.1 | 3.00E-16 | glycosyl transferase family 2 [Gloeocapsa sp. PCC 7428] |
| Swissprot | tr|Q651X6|CSLE6_ORYSJ | 0 | Cellulose synthase-like protein E6 |
| trEMBL | tr|I1KYK7|I1KYK7_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G44310.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00027 | 34924 | 57259 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GT2 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000027s00001507.1 | PF03552.9 | Cellulose_synt | 56 | 203 | 6.30E-35 |
| Glyur000027s00001507.1 | PF03552.9 | Cellulose_synt | 263 | 490 | 1.80E-32 |
| Glyur000027s00001507.1 | PF03552.9 | Cellulose_synt | 722 | 950 | 2.20E-65 |
| Glyur000027s00001507.1 | PF03552.9 | Cellulose_synt | 1311 | 1560 | 1.60E-71 |
| Glyur000027s00001507.1 | PF03552.9 | Cellulose_synt | 1566 | 1657 | 4.10E-17 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.758 |
| SRR1783600 | control | 1.847 |
| SRR1783602 | moderate drought stress | 1.575 |
| SRR1811619 | moderate drought stress | 1.531 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.639 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.597 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.849 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.596 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.643 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.598 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 18.828 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 18.851 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 8.334 |
| SRR2868004 | Drought Stress(Tissue:root) | 21.566 |
| SRR2967015 | Control (Tissue:root) | 8.542 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 12.171 |
| SRR9715740 | Leave | 13.506 |
| SRR9715741 | Leave | 13.303 |
| SRR9715739 | Root | 1.168 |
| SRR9715742 | Root | 1.648 |
| SRR9715743 | Root | 1.598 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 6.412 |
| SRR8749028 | MeJA induced 9h | 18.990 |
| SRR8749029 | MeJA induced 9h | 4.016 |
| SRR8749030 | Uninduced | 28.869 |
| SRR8749031 | Uninduced | 18.784 |
| SRR8749032 | Uninduced | 7.859 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 7.758 |
| SRR8400027 | Control-Root | 5.572 |