Gene detail information of Glyur000027s00001510.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G03190.20RAD3-like DNA-binding helicase protein
NRKEH38938.10DNA repair helicase (rad3) [Medicago truncatula]
COGNP_127020.19.00E-35DNA repair helicase rad3 [Pyrococcus abyssi GE5]
Swissprottr|Q8W4M7|ERCC2_ARATH0DNA repair helicase UVH6
trEMBLtr|A0A072VC04|A0A072VC04_MEDTR0DNA repair helicase (Rad3) {ECO:0000313|EMBL:KEH38938.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold000274727752010+


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K10844ERCC2, XPD EC:3.6.4.12 Basal transcription factors map03022
Nucleotide excision repairmap03420


Gene Ontology

biological_process

GO:0006139  nucleobase-containing compound metabolic process

GO:0006289  nucleotide-excision repair


cellular_component

GO:0005634  nucleus


molecular_function

GO:0003676  nucleic acid binding

GO:0003677  DNA binding

GO:0004003  ATP-dependent DNA helicase activity

GO:0005524  ATP binding

GO:0008026  ATP-dependent helicase activity

GO:0016818  hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000027s00001510.1PF06733.10DEAD_2722457.80E-44
Glyur000027s00001510.1PF06777.6DUF12272594037.20E-48
Glyur000027s00001510.1PF13307.1Helicase_C_25146873.80E-41


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control14.973
SRR1783600control15.239
SRR1783602moderate drought stress16.789
SRR1811619moderate drought stress16.664

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain13.314
DRR006520Root Summer glycyrrhizin high producing strain13.015
DRR006521Root Winter glycyrrhizin high producing strain11.509
DRR006522Root Winter glycyrrhizin high producing strain11.391
DRR006523Root Summer glycyrrhizin low producing strain13.903
DRR006524Root Summer glycyrrhizin low producing strain13.944
DRR006525Leaf Summer glycyrrhizin high producing strain9.733
DRR006526Leaf Summer glycyrrhizin high producing strain9.824

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)17.089
SRR2868004Drought Stress(Tissue:root)17.483
SRR2967015Control (Tissue:root)18.920

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave11.208
SRR9715740Leave15.602
SRR9715741Leave14.057
SRR9715739Root5.205
SRR9715742Root9.678
SRR9715743Root11.341

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h8.755
SRR8749028MeJA induced 9h11.472
SRR8749029MeJA induced 9h3.551
SRR8749030Uninduced8.861
SRR8749031Uninduced0.788
SRR8749032Uninduced0.723

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root19.416
SRR8400027Control-Root21.517

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved