Gene detail information of Glyur000027s00001510.1 |
Functional Annotation
Database | Orthologs | E value | Annotation |
---|---|---|---|
TAIR | AT1G03190.2 | 0 | RAD3-like DNA-binding helicase protein |
NR | KEH38938.1 | 0 | DNA repair helicase (rad3) [Medicago truncatula] |
COG | NP_127020.1 | 9.00E-35 | DNA repair helicase rad3 [Pyrococcus abyssi GE5] |
Swissprot | tr|Q8W4M7|ERCC2_ARATH | 0 | DNA repair helicase UVH6 |
trEMBL | tr|A0A072VC04|A0A072VC04_MEDTR | 0 | DNA repair helicase (Rad3) {ECO:0000313|EMBL:KEH38938.1} |
Sequence
Transcript Sequence |
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Protein Sequence |
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Location information(JBrowse)
Scaffold | Start | End | Strand |
---|---|---|---|
Scaffold00027 | 47277 | 52010 | + |
Gene family
Gene family | subfamily |
---|---|
-- | -- |
KEGG pathway
KO | Enzyme | Enzyme ID | pathway | mapID |
---|---|---|---|---|
K10844 | ERCC2, XPD | EC:3.6.4.12 | Basal transcription factors | map03022 |
Nucleotide excision repair | map03420 |
Gene Ontology
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Pfam domain
Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
---|---|---|---|---|---|
Glyur000027s00001510.1 | PF06733.10 | DEAD_2 | 72 | 245 | 7.80E-44 |
Glyur000027s00001510.1 | PF06777.6 | DUF1227 | 259 | 403 | 7.20E-48 |
Glyur000027s00001510.1 | PF13307.1 | Helicase_C_2 | 514 | 687 | 3.80E-41 |
Expression pattern
SRA Experiment | Description | TPM |
---|---|---|
SRR1783599 | control | 14.973 |
SRR1783600 | control | 15.239 |
SRR1783602 | moderate drought stress | 16.789 |
SRR1811619 | moderate drought stress | 16.664 |
SRA Experiment | Description | TPM |
---|---|---|
DRR006519 | Root Summer glycyrrhizin high producing strain | 13.314 |
DRR006520 | Root Summer glycyrrhizin high producing strain | 13.015 |
DRR006521 | Root Winter glycyrrhizin high producing strain | 11.509 |
DRR006522 | Root Winter glycyrrhizin high producing strain | 11.391 |
DRR006523 | Root Summer glycyrrhizin low producing strain | 13.903 |
DRR006524 | Root Summer glycyrrhizin low producing strain | 13.944 |
DRR006525 | Leaf Summer glycyrrhizin high producing strain | 9.733 |
DRR006526 | Leaf Summer glycyrrhizin high producing strain | 9.824 |
SRA Experiment | Description | TPM |
---|---|---|
SRR2867873 | Salt Stress(Tissue:root) | 17.089 |
SRR2868004 | Drought Stress(Tissue:root) | 17.483 |
SRR2967015 | Control (Tissue:root) | 18.920 |
SRA Experiment | Description | TPM |
---|---|---|
SRR9715738 | Leave | 11.208 |
SRR9715740 | Leave | 15.602 |
SRR9715741 | Leave | 14.057 |
SRR9715739 | Root | 5.205 |
SRR9715742 | Root | 9.678 |
SRR9715743 | Root | 11.341 |
SRA Experiment | Description | TPM |
---|---|---|
SRR8749027 | MeJA induced 9h | 8.755 |
SRR8749028 | MeJA induced 9h | 11.472 |
SRR8749029 | MeJA induced 9h | 3.551 |
SRR8749030 | Uninduced | 8.861 |
SRR8749031 | Uninduced | 0.788 |
SRR8749032 | Uninduced | 0.723 |
SRA Experiment | Description | TPM |
---|---|---|
SRR8400026 | NaCl treatment-Root | 19.416 |
SRR8400027 | Control-Root | 21.517 |