Gene detail information of Glyur000027s00001525.2 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G55970.2 | 5.00E-88 | RING/U-box superfamily protein |
| NR | XP_004498153.1 | 1.59E-150 | PREDICTED: E3 ubiquitin-protein ligase At4g11680-like [Cicer arietinum] |
| Swissprot | tr|Q8GUU2|RIE1_ARATH | 4.00E-32 | E3 ubiquitin protein ligase RIE1 |
| trEMBL | tr|I1N083|I1N083_SOYBN | 4.00E-147 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA18G08270.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00027 | 139661 | 143161 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000027s00001525.2 | PF13639.1 | zf-RING_2 | 300 | 342 | 2.60E-13 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 6.809 |
| SRR1783600 | control | 7.599 |
| SRR1783602 | moderate drought stress | 6.914 |
| SRR1811619 | moderate drought stress | 6.019 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 10.815 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 10.303 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 65.790 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 65.544 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 11.574 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 11.674 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.817 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.868 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 31.377 |
| SRR2868004 | Drought Stress(Tissue:root) | 36.755 |
| SRR2967015 | Control (Tissue:root) | 30.033 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 8.436 |
| SRR9715740 | Leave | 5.349 |
| SRR9715741 | Leave | 3.995 |
| SRR9715739 | Root | 3.035 |
| SRR9715742 | Root | 16.222 |
| SRR9715743 | Root | 13.676 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.167 |
| SRR8749028 | MeJA induced 9h | 0.317 |
| SRR8749029 | MeJA induced 9h | 0.091 |
| SRR8749030 | Uninduced | 22.860 |
| SRR8749031 | Uninduced | 3.913 |
| SRR8749032 | Uninduced | 0.940 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 39.972 |
| SRR8400027 | Control-Root | 54.224 |