Gene detail information of Glyur000027s00001541.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G26510.20uridine kinase-like 4
NRXP_003600425.10Uridine-cytidine kinase, putative [Medicago truncatula]
COGNP_242141.14.00E-57uridine kinase [Bacillus halodurans C-125]
Swissprottr|O65583|UKL4_ARATH0Putative uracil phosphoribosyltransferase
trEMBLtr|G7IY62|G7IY62_MEDTR0Uridine kinase {ECO:0000256|RuleBase:RU003825}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00027224972232353+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00876udk, UCK EC:2.7.1.48 Pyrimidine metabolism map00240
Drug metabolism - other enzymesmap00983


Gene Ontology

biological_process

GO:0008152  metabolic process

GO:0044206  UMP salvage


molecular_function

GO:0004849  uridine kinase activity

GO:0005524  ATP binding

GO:0016301  kinase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000027s00001541.1PF00485.13PRK492331.40E-42
Glyur000027s00001541.1PF14681.1UPRTase2634644.30E-72


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control31.618
SRR1783600control31.512
SRR1783602moderate drought stress47.066
SRR1811619moderate drought stress47.075

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain38.616
DRR006520Root Summer glycyrrhizin high producing strain38.300
DRR006521Root Winter glycyrrhizin high producing strain71.647
DRR006522Root Winter glycyrrhizin high producing strain70.251
DRR006523Root Summer glycyrrhizin low producing strain41.806
DRR006524Root Summer glycyrrhizin low producing strain42.283
DRR006525Leaf Summer glycyrrhizin high producing strain15.464
DRR006526Leaf Summer glycyrrhizin high producing strain15.381

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)34.571
SRR2868004Drought Stress(Tissue:root)47.548
SRR2967015Control (Tissue:root)84.070

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave25.924
SRR9715740Leave16.692
SRR9715741Leave39.952
SRR9715739Root11.513
SRR9715742Root33.411
SRR9715743Root30.179

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h48.664
SRR8749028MeJA induced 9h118.862
SRR8749029MeJA induced 9h79.939
SRR8749030Uninduced157.453
SRR8749031Uninduced329.238
SRR8749032Uninduced303.502

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root50.665
SRR8400027Control-Root51.890

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved