Gene detail information of Glyur000027s00001553.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G13300.2 | 0 | Transducin/WD40 repeat-like superfamily protein |
| NR | XP_003530822.2 | 0 | PREDICTED: enhancer of mRNA-decapping protein 4-like [Glycine max] |
| Swissprot | tr|Q9LTT8|VCS_ARATH | 0 | Enhancer of mRNA-decapping protein 4 |
| trEMBL | tr|I1KYR5|I1KYR5_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G44880.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00027 | 284395 | 292558 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | DWD |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000027s00001553.1 | PF00400.27 | WD40 | 267 | 300 | 0.00099 |
| Glyur000027s00001553.1 | PF00400.27 | WD40 | 387 | 419 | 3.30E-05 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 35.136 |
| SRR1783600 | control | 35.514 |
| SRR1783602 | moderate drought stress | 38.107 |
| SRR1811619 | moderate drought stress | 37.770 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 28.157 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 27.974 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 27.041 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 26.483 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 29.637 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 29.762 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 15.789 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 15.546 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 47.027 |
| SRR2868004 | Drought Stress(Tissue:root) | 50.766 |
| SRR2967015 | Control (Tissue:root) | 55.528 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 16.935 |
| SRR9715740 | Leave | 19.357 |
| SRR9715741 | Leave | 19.201 |
| SRR9715739 | Root | 7.729 |
| SRR9715742 | Root | 30.518 |
| SRR9715743 | Root | 26.904 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 26.156 |
| SRR8749028 | MeJA induced 9h | 46.614 |
| SRR8749029 | MeJA induced 9h | 19.813 |
| SRR8749030 | Uninduced | 21.581 |
| SRR8749031 | Uninduced | 13.408 |
| SRR8749032 | Uninduced | 10.423 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 37.261 |
| SRR8400027 | Control-Root | 39.908 |