Gene detail information of Glyur000027s00001555.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G49475.1 | 9.00E-17 | AP2/B3-like transcriptional factor family protein |
| NR | XP_006606882.1 | 1.72E-101 | PREDICTED: B3 domain-containing transcription factor VRN1-like [Glycine max] |
| Swissprot | tr|Q851V5|Y3216_ORYSJ | 3.00E-22 | Putative B3 domain-containing protein Os03g0621600 |
| trEMBL | tr|G8A2Z5|G8A2Z5_MEDTR | 3.00E-92 | Transcriptional factor B3 family protein {ECO:0000313|EMBL:AES70703.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00027 | 300328 | 307541 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | B3 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000027s00001555.1 | PF02362.16 | B3 | 27 | 110 | 9.30E-13 |
| Glyur000027s00001555.1 | PF02362.16 | B3 | 188 | 276 | 1.40E-07 |
| Glyur000027s00001555.1 | PF02362.16 | B3 | 279 | 354 | 6.10E-10 |
| Glyur000027s00001555.1 | PF02362.16 | B3 | 459 | 521 | 5.80E-09 |
| Glyur000027s00001555.1 | PF02362.16 | B3 | 524 | 597 | 4.50E-11 |
| Glyur000027s00001555.1 | PF02362.16 | B3 | 683 | 747 | 5.70E-08 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.016 |
| SRR1783600 | control | 0.013 |
| SRR1783602 | moderate drought stress | 0.017 |
| SRR1811619 | moderate drought stress | 0.032 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.024 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.574 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.154 |
| SRR2967015 | Control (Tissue:root) | 0.065 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.000 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.000 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.137 |
| SRR9715743 | Root | 0.014 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.023 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.060 |
| SRR8400027 | Control-Root | 0.168 |