Gene detail

Home
Network
Tools
- Search
- Blast
- Motif
- GSEA
- Heatmap Analysis
- JBrowse
Gene family
KEGG
Download
Help

Gene detail information of Glyur000027s00001561.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G56110.1	4.00E-85	myb domain protein 103
NR	XP_004500173.1	0	PREDICTED: transcription repressor MYB4-like [Cicer arietinum]
Swissprot	tr\|Q50EX6\|ODO1_PETHY	2.00E-59	Protein ODORANT1
trEMBL	tr\|V7BL43\|V7BL43_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW18689.1}

Sequence

Transcript Sequence

>Glyur000027s00001561.1
ATGGGCCGTATTCCATGCTGTGAGAAGGACAACGTGAAGAGAGGTCAGTGGACACCTGAGGAAGATAACAAGCTCTCCTCATACATTGCTCAACATGGCACTCGCAATTGGCGCCTCATCCCCAAGAATGCTGGCCTCCAGAGATGTGGAAAGAGCTGCAGGCTAAGGTGGACTAATTACCTTCGTCCTGATCTTAAACATGGTCAATTCTCAGATTCAGAAGAACAAACCATTGTTAAGCTTCATTCAGTTTTCGGTAACAGATGGTCACTGATAGCAGCCCAGCTGCCAGGACGCACTGACAATGATGTCAAAAACCATTGGAACACCAAGCTGAAGAAGAAACTATCAGGCATGGGTATTGACCCTGTCACCCACAAGCCATTCTCCCATCTAATGGCTGAAATNGCTACAACATTGGCACCCCCACAAGCAGCTCACCTAGCTGAAGCAGCCCTTGGCTGCTTCAAAGATGAAGTGCTCCACCTTCTCACCAGGAAGCCAATTAACTTCCAGGGCCAACATTCCAATGCAGCACTGGGGAATAACTTCACTGATTACATTAACTGTAAGCCAGAAGAAAANGACGACACTGTTGAGACGATTAAGCTTGACCTATCAAAGACCATACAACAAGAACCCGAAATGATGCCCTCAAATAAACCTTGGGACTCCCCTGCGGCTACATCTGCAAGTTATGCAATGTCATACAGTGTTTTCCCAACAATGCCTGGGTTTCAATTCAGTCCAGCATCTTTTGGCAATAAAGAGGATACATCACCATGGAACCAAAGTGTGTGTACTGGAAGCACATGCACANCCATGGATCAGCAAAGCCAGTTCCATGAAAAACTTGAAGCGGAAAATGGGGATGACTCGGAGGCTACAAAAGAAATAAGAAATCTATCCAATATATTCAACTCAGACTGTGTCATGTGGGATTTACCAGCAGATGATTTAATTAACCCCATGGTCTAA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00027	351869	353056	+

Gene family

Gene family	subfamily
Transcription Factors Family	MYB

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003677 DNA binding

GO:0003682 chromatin binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000027s00001561.1	PF00249.26	Myb_DNA-binding	14	61	3.00E-16
Glyur000027s00001561.1	PF00249.26	Myb_DNA-binding	68	110	1.20E-12

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.640
SRR1783600	control	0.383
SRR1783602	moderate drought stress	1.055
SRR1811619	moderate drought stress	1.282

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.531
DRR006520	Root Summer glycyrrhizin high producing strain	0.814
DRR006521	Root Winter glycyrrhizin high producing strain	0.229
DRR006522	Root Winter glycyrrhizin high producing strain	0.187
DRR006523	Root Summer glycyrrhizin low producing strain	0.725
DRR006524	Root Summer glycyrrhizin low producing strain	1.101
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.285
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.544

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	3.376
SRR2868004	Drought Stress(Tissue:root)	2.903
SRR2967015	Control (Tissue:root)	1.950

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	1.262
SRR9715740	Leave	0.745
SRR9715741	Leave	1.541
SRR9715739	Root	0.045
SRR9715742	Root	1.777
SRR9715743	Root	1.913

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.453
SRR8749028	MeJA induced 9h	16.916
SRR8749029	MeJA induced 9h	19.108
SRR8749030	Uninduced	9.504
SRR8749031	Uninduced	3.559
SRR8749032	Uninduced	6.435

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	0.356
SRR8400027	Control-Root	0.301