Gene detail information of Glyur000027s00001564.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G56130.11.00E-168Transducin/WD40 repeat-like superfamily protein
NRXP_007146698.10hypothetical protein PHAVU_006G061900g [Phaseolus vulgaris]
COGYP_007092635.12.00E-31WD-40 repeat-containing protein [Chroococcidiopsis thermalis PCC 7203]
Swissprottr|Q9FKT5|THOC3_ARATH0THO complex subunit 3
trEMBLtr|V7BL70|V7BL70_PHAVU0Uncharacterized protein {ECO:0000313|EMBL:ESW18692.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00027376986381284-


Gene family

Gene familysubfamily
Ubiquitin FamilyDWD


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

molecular_function

GO:0005515  protein binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000027s00001564.1PF00400.27WD4013474.90E-07
Glyur000027s00001564.1PF00400.27WD4060944.60E-09
Glyur000027s00001564.1PF00400.27WD401822184.50E-09
Glyur000027s00001564.1PF00400.27WD402242540.0053


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control8.914
SRR1783600control9.089
SRR1783602moderate drought stress6.086
SRR1811619moderate drought stress5.913

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain15.330
DRR006520Root Summer glycyrrhizin high producing strain14.849
DRR006521Root Winter glycyrrhizin high producing strain9.347
DRR006522Root Winter glycyrrhizin high producing strain9.166
DRR006523Root Summer glycyrrhizin low producing strain11.972
DRR006524Root Summer glycyrrhizin low producing strain12.019
DRR006525Leaf Summer glycyrrhizin high producing strain9.235
DRR006526Leaf Summer glycyrrhizin high producing strain9.015

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)22.469
SRR2868004Drought Stress(Tissue:root)18.051
SRR2967015Control (Tissue:root)16.236

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave14.079
SRR9715740Leave16.576
SRR9715741Leave16.469
SRR9715739Root1.593
SRR9715742Root6.855
SRR9715743Root4.066

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h16.444
SRR8749028MeJA induced 9h13.569
SRR8749029MeJA induced 9h10.473
SRR8749030Uninduced10.638
SRR8749031Uninduced3.276
SRR8749032Uninduced4.023

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root15.598
SRR8400027Control-Root16.263

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved