Gene detail information of Glyur000027s00001567.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G12840.4 | 3.00E-71 | nuclear factor Y, subunit A1 |
| NR | XP_004500195.1 | 0 | PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Cicer arietinum] |
| Swissprot | tr|Q9LXV5|NFYA1_ARATH | 9.00E-90 | Nuclear transcription factor Y subunit A-1 |
| trEMBL | tr|K7MQE5|K7MQE5_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA18G07890.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00027 | 390946 | 393964 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | NF-YA |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000027s00001567.1 | PF02045.10 | CBFB_NFYA | 189 | 245 | 3.90E-30 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 36.901 |
| SRR1783600 | control | 37.380 |
| SRR1783602 | moderate drought stress | 51.918 |
| SRR1811619 | moderate drought stress | 51.832 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 87.484 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 86.126 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 129.999 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 126.468 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 129.139 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 129.804 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 60.824 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 60.104 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 60.041 |
| SRR2868004 | Drought Stress(Tissue:root) | 82.682 |
| SRR2967015 | Control (Tissue:root) | 81.184 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 104.817 |
| SRR9715740 | Leave | 82.922 |
| SRR9715741 | Leave | 133.488 |
| SRR9715739 | Root | 39.014 |
| SRR9715742 | Root | 71.400 |
| SRR9715743 | Root | 62.414 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 36.103 |
| SRR8749028 | MeJA induced 9h | 76.098 |
| SRR8749029 | MeJA induced 9h | 30.555 |
| SRR8749030 | Uninduced | 35.794 |
| SRR8749031 | Uninduced | 13.868 |
| SRR8749032 | Uninduced | 19.174 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 104.181 |
| SRR8400027 | Control-Root | 114.556 |