Gene detail information of Glyur000027s00001592.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G46960.10RNA helicase, ATP-dependent, SK12/DOB1 protein
NRKHN06266.10Helicase SKI2W [Glycine soja]
COGYP_003322221.13.00E-86DEAD/DEAH box helicase [Thermobaculum terrenum ATCC BAA-798]
Swissprottr|B9DFG3|ISE2_ARATH7.00E-73DEAD-box ATP-dependent RNA helicase ISE2, chloroplastic (Precursor)
trEMBLtr|I1N032|I1N032_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA18G07510.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00027492917506902-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K12599SKI2, SKIV2L EC:3.6.4.- RNA degradation map03018


Gene Ontology

molecular_function

GO:0003676  nucleic acid binding

GO:0005524  ATP binding

GO:0016817  hydrolase activity, acting on acid anhydrides

GO:0016818  hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000027s00001592.1PF00270.24DEAD3534992.80E-16
Glyur000027s00001592.1PF00271.26Helicase_C6977709.20E-05
Glyur000027s00001592.1PF13234.1rRNA_proc-arch105011210.00026
Glyur000027s00001592.1PF08148.7DSHCT114811931.10E-10
Glyur000027s00001592.1PF08148.7DSHCT119613021.00E-32


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control7.013
SRR1783600control7.226
SRR1783602moderate drought stress8.130
SRR1811619moderate drought stress7.862

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain7.692
DRR006520Root Summer glycyrrhizin high producing strain7.388
DRR006521Root Winter glycyrrhizin high producing strain8.625
DRR006522Root Winter glycyrrhizin high producing strain8.295
DRR006523Root Summer glycyrrhizin low producing strain8.355
DRR006524Root Summer glycyrrhizin low producing strain8.236
DRR006525Leaf Summer glycyrrhizin high producing strain4.802
DRR006526Leaf Summer glycyrrhizin high producing strain4.849

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)22.884
SRR2868004Drought Stress(Tissue:root)26.406
SRR2967015Control (Tissue:root)26.233

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave11.498
SRR9715740Leave11.540
SRR9715741Leave15.970
SRR9715739Root2.482
SRR9715742Root18.142
SRR9715743Root15.734

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h9.088
SRR8749028MeJA induced 9h23.443
SRR8749029MeJA induced 9h7.868
SRR8749030Uninduced7.572
SRR8749031Uninduced2.924
SRR8749032Uninduced2.550

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root24.179
SRR8400027Control-Root22.461

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved