Gene detail information of Glyur000027s00001603.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G49475.1 | 4.00E-15 | AP2/B3-like transcriptional factor family protein |
| NR | XP_003600452.1 | 5.85E-100 | B3 domain-containing protein [Medicago truncatula] |
| Swissprot | tr|Q8L3W1|VRN1_ARATH | 7.00E-25 | B3 domain-containing transcription factor VRN1 |
| trEMBL | tr|G8A2Z5|G8A2Z5_MEDTR | 2.00E-100 | Transcriptional factor B3 family protein {ECO:0000313|EMBL:AES70703.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00027 | 551365 | 552758 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | B3 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000027s00001603.1 | PF02362.16 | B3 | 11 | 74 | 2.10E-11 |
| Glyur000027s00001603.1 | PF02362.16 | B3 | 168 | 264 | 2.80E-11 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.474 |
| SRR1783600 | control | 0.445 |
| SRR1783602 | moderate drought stress | 2.633 |
| SRR1811619 | moderate drought stress | 2.676 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.360 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.255 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.717 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.749 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.263 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.276 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.447 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.209 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 2.340 |
| SRR2868004 | Drought Stress(Tissue:root) | 4.511 |
| SRR2967015 | Control (Tissue:root) | 7.611 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 10.502 |
| SRR9715740 | Leave | 10.973 |
| SRR9715741 | Leave | 26.656 |
| SRR9715739 | Root | 0.119 |
| SRR9715742 | Root | 0.601 |
| SRR9715743 | Root | 0.614 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.694 |
| SRR8749028 | MeJA induced 9h | 2.090 |
| SRR8749029 | MeJA induced 9h | 1.163 |
| SRR8749030 | Uninduced | 10.723 |
| SRR8749031 | Uninduced | 1.943 |
| SRR8749032 | Uninduced | 2.911 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 1.674 |
| SRR8400027 | Control-Root | 1.293 |